Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0262 ATGAGCGGAAAAGTGATTGTCCCCGCTGTTTCTATAATCCTCGTGGTGGGTGTGGCCCTCGGCGTCGTCGGCGTCTTCCACTATAGGAGCAAAGACAGCGACCATGGTCAGGCTACAGAGATGAACACCCACACAAAGGCCGTTGCCGCCCTTTGCCAAAGCTCCGACGACCCCAAGCTCTGCCACAACACGCTCGACCCCGTCAACAGCACCGACCCTAAGGATTATATAAAGGCGACGGTAGAATCCGCCATGAACACCGTCATCCAGTCCTTTAATTTGACCGACAGGGTTGGCATGGAGCACGGGAATAGTAGCACAAGAGGCATAAAGATGGCCGTCGAGGATTGCAAGGACTTGTTGCAATCTGCTATAATGGAACTTCAAGCATCGGGTGTGCTAGTTCAAGACAACAATGCTCAGAGCGTGACCGACAGGGAAGAGGACCTCAAGAACTGGTTGAGCGCCGTCATAGCCTACCAGCAATCCTGTCTCGATGGGTTTTCGACGGACGACGATGGCGAGAAGGCGATCCAGCAACAATTGCAAACAGGTGGGCTGGACAACGTGGAGCAGCTCACAGGGTTGGCACTTGATGTTGTGGCTGGCATTTCCCAGTTGCTCTCCGTCTTCGACTTGGACTTGGACGTGAAACCTGCTTCTCGTCTCCTTCTGGGCGGCGTGGATGTGGATCACGACGGCTATCCCACATGGTTGTCCAGCACCCAACGCCAGCTCATCGAGCTGCCCAACACCGGACATCCTACAAATCTGCCCAACGCCGTGGTTGCCCAGGACGGAAGTGGCCAGTTCAAGACCATTCAAGAAGCCGTCGACTCATACCCCCCAAAATTCGAAGGCAGATTCACCATCTACGTCAAGGCCGGTACCTACAACGAATACGTCCACGTTAACAAGAAGCAGCAGAACATCCTCATGTACGGTGATGGCCCCACCAAGACCATCGTCACCGGCAACAGGAGCTACACCTCCGGTTGGAAAACAATCCAAACTGCCACCTTCACCACCTTGGGTGACGGCTTCGTTGCCAAGTCGATGGCCTTCGAGAACACCGCCGGGCCTGAGGGACATCAAGCAGTTGCACTGAGGGTGATGGGTGATCGCTCAGCTTTCTTCGACTGTGCCATGCGCGGCTACCAAGACACCTTGTACGCACACGCCAAACGTCAATTCTACCGCAACTGTGAGATCTCCGGCACTGTGGACTTCATCTTCGGATACAGCAGCACCTTGGTCCAGAACTCCAGAATCTTGGTCAGGAAGCCCATGGATAACCAGCAAAACATCGTCGTCGCCGACGGCACTGCCAAAAAGCAAATGCGCACCGGAATTGTCCTCCAGAACTGCCAGATCATGCCCGACGCCAGCCTCACCGCCGACAGGTTGACCGTCAAGTCCTACCTGGCCAGGCCTTGGAAGGCATTCTCCAGGGCTGTCTTCATGGAAAGTGAAATCGGTGATCTCATCCAAGCAGACGGTTATCTTCCATGGATGGGCAACATGTACCTTGACACCTGCTACTTCGCCGAGTTTGCAAACACCGGTCCCGGTGCCACCACTAACAACAGGGTCAAGTGGAGCCGCGGAGTCCTCACCAAGGCTGATGCTACTCAATACACCGCCGAACCTTGGCTTCAGGCCGGCTCATGGTTGCCCGCCACCAGCATTGCCTTCGACAGCGGTCTCACCAAGGCTTAA 1719 0.5526 MSGKVIVPAVSIILVVGVALGVVGVFHYRSKDSDHGQATEMNTHTKAVAALCQSSDDPKLCHNTLDPVNSTDPKDYIKATVESAMNTVIQSFNLTDRVGMEHGNSSTRGIKMAVEDCKDLLQSAIMELQASGVLVQDNNAQSVTDREEDLKNWLSAVIAYQQSCLDGFSTDDDGEKAIQQQLQTGGLDNVEQLTGLALDVVAGISQLLSVFDLDLDVKPASRLLLGGVDVDHDGYPTWLSSTQRQLIELPNTGHPTNLPNAVVAQDGSGQFKTIQEAVDSYPPKFEGRFTIYVKAGTYNEYVHVNKKQQNILMYGDGPTKTIVTGNRSYTSGWKTIQTATFTTLGDGFVAKSMAFENTAGPEGHQAVALRVMGDRSAFFDCAMRGYQDTLYAHAKRQFYRNCEISGTVDFIFGYSSTLVQNSRILVRKPMDNQQNIVVADGTAKKQMRTGIVLQNCQIMPDASLTADRLTVKSYLARPWKAFSRAVFMESEIGDLIQADGYLPWMGNMYLDTCYFAEFANTGPGATTNNRVKWSRGVLTKADATQYTAEPWLQAGSWLPATSIAFDSGLTKA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0262 572 Pfam Pectinesterase 260 553 IPR000070 GO:0030599|GO:0042545
Lele16g0262 572 PANTHER PECTINESTERASE 18 561 - -
Lele16g0262 572 SMART PMEI_2 43 200 IPR006501 GO:0004857
Lele16g0262 572 Pfam Plant invertase/pectin methylesterase inhibitor 47 199 IPR006501 GO:0004857
Lele16g0262 572 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Lele16g0262 572 SUPERFAMILY Pectin lyase-like 260 567 IPR011050 -
Lele16g0262 572 FunFam Pectinesterase 44 205 - -
Lele16g0262 572 FunFam Pectinesterase 255 569 - -
Lele16g0262 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 205 IPR035513 -
Lele16g0262 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 41 197 IPR006501 GO:0004857
Lele16g0262 572 CDD PMEI-like_3 50 205 - -
Lele16g0262 572 Gene3D - 256 569 IPR012334 -
Lele16g0262 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 201 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0262 Lele-ChrLele16 1465045 1466855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0262 1 569 Carbohydrate Esterase AT2G47030 40.461 3.35e-140 417