Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0260 ATGGGTCAGAACGGCTTGGATGGCGCGGCTGAGCATGACAAGGCAACCACATCACAGAATCACACAGAAACCAGCACAAACGAGGAAAACAGAGAGATGGCTAAGCAAAAAGGAAAAGCCGACACAGTTCCATTTCACAGGCTGTTCTCATTTGCGGATTCCACTGATACTCTGTTAATGATCGCTGGCACCGTTGGGGCCGTTGGAAATGGTCTGGGTTTGCCTCTCATGGCGTTACTCATGGGCGAAATGATCGATTCTTTTGGAAGTAACCAGCGAAGCACGCACGTCGCTGCCCAAGTTTCCAAGGTTTCTTTGAAATTTGTGTACTTGGCGGTAGGAATGGGTGTGGCAGCATGCCTACAGGTGTCTTGCTGGATGGTCACAGGGGAAAGGCAGTCTGCGCGAATAAGGGGATTGTATCTGAAAACCATACTAAGACAAGACGTTACTTTCTTCGATAAGGAAACAAACACCGGAGAGGTGGTCGGGAGAATGTCCGGGGACACTGTTCTCATACAGGATGCCATGGGAGAGAAGGTTGGTAAATTTCAGCAACTAATTTCAACATTCATCGGCGGCTTCGTGGTTGCATTTATTAAAGGATGGCTTCTTGCACTCGTCATGATGTCCATTCTTCCATTGCTTGTGGTGGCCGGGGCATCTATGGCCTTAATTATAGGAAGGATGGCTTCCCGTGGTCAGACGGCTTACGCAAAAGCTGCAAATATCGTCGAACAAACTCTCGGCTCCATTAGAACTGTTGCTTCCTTCACAGGTGAAAAGCAAGCGGTCTCTAAATACAGCAAATTTCTGGTGGATGCTTACAAATCAGGAGTCCATGAAGGTTTTGTAGCTGGCCTGGGTTTCGGCACGGTTATGTTCGTCTTTTTCTGCGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAGATGATACTGGAAAGAGGATACAACGGCGGCACGGTGATTAATGTGATCGTCGCTATATTAACCGCTTCCATGTCTCTTGGGCAGGCCACCCCTTGCTTGAGTGCTTTTGCTGCGGGTCAAGCTGCAGCTTATAAAATGTTCGAGACAATAGAGAGAAAGCCGGAGATAGACGCTTATGATCCAAACGGTAAAACATTAGAGGACATTAATGGCGACATAGAGTTGAAGGATGTTTACTTTAGTTATCCAACTAGACCCGAGGAGCTAATATTCAATGGGTTCTCTCTTCATATACCAAGTGGCACCACTGCCGCATTGGTTGGAGAGAGTGGAAGTGGCAAGTCAACAGTTATTAGCTTAATAGAAAGATTCTATGATCCACGGTCAGGTGAAGTTCTTATTGATGGCATCAACCTGAAACAACTTCAGCTCAGATGGATTAGAGGTAAAATCGGCCTCGTCAGCCAGGAGCCCGTATTGTTTGCATCTAGCATTAAGGACAACATCTTATATGGAAAGGAGGGAGCAACAATTGAAGAAGTCAGAGCTGCAGCTGAACTTGCAAATGCTGCTAAGTTCATTGACAAATTGCCACAGGGATACGACACAATGGTTGGTGATCATGGAACTCAACTATCTGGTGGACAGAAACAGCGTGTTGCTATTGCAAGAGCAATTATAAAAAATCCAAGAATACTTCTTCTAGATGAAGCGACGAGTGCTTTAGATGCAGAATCTGAAAGGATAGTTCAAGAGGCTCTAGATAGGGTCATGGTCAACCGAACTACTGTTATTGTGGCTCATCGATTGAGCACGGTGAGGAATGCCGATATGATTGCTGTGATTCATAGAGGAAAGATGGTTGAAAAAGGAACGCATTCAGAGTTGCTCAAGGATCCCGAGGGAGCTTACTCTCAGCTTATACGCTTGCAAGAAGTAAACAAAGAGTCAGAAGAACCTTCAGAGCGTCAAAACAAAAATGAAATTTCCCTAGAATCATTCAGACAATCGAGCCAAAGGAGGTCACTCCGGAGATCCATAAGTCGAGGATCATCTGTCGGCAGTAGTAGCAGGCACTCATTTTCCGTACCATTTGGCATGCCCACTGTAGTTAACGTCCCTGAACCTGAACTTGAAAAATTAGACGCGAGAGAAGAATTGCCAGACGTTCCAATTCTTCGCCTTGCTTCCCTCAACAAGCCTGAAATTCCAGTGCTTCTGCTCGGATGTGTGGCTGCCGTAGTAAATGGTGCAATACTTCCGGTGTTTGGTTTGTTGGTTTCCTCTGTTATCAAAACATTCTACGAGCCACCTCATGAGATGAAAAAGGATGCCAGGTTTTGGGCACTTATCTTTTTGGCCCTTGGCATTGCATCACTGGTCGCACTTCCATCCCGAGGATACTTGTTTTCTGTAGCTGGCTGTAAGTTAATCCAACGCATCAGAATGATGTGTTTTGAGAAGGTCGTGAACATGGAGGTTGCTTGGTTTGATGAGCCAGAGCACTCAAGTGGAGTAATAGGTGCAAGGCTTTCGGCGGATGCTTCGACGGTGCGAGCCCTTGTTGGTGATGCGCTGGGTCTTCTGATTCAAAATATAGCATCAACGTTGACTGGTGTAATTATTGCTTTCGTTGCGAGCTGGGAGTTAGCTTTAGTTATTCTGGTACTCATTCCCCTGATTGGGGTGAACGGATATGTTCAAATGAAATTCATGAAGGGTTTTAGTGCAGATGCAAAGATGATGTACGAAGAAGCAAGCCAAGTAGCTAATGATGCTGTTGGAAGCATCAGAACAGTAGCCTCTTTCTGTGCTGAAGAGAAGGTAATGGAACTGTATAGGAAGAAATGCGAAGGCCCCATGAAATCTGGGGTACGGCTAGGCTTGATCAGTGGAACAGGATTTGGGTGTTCGTATTTCTTACTTTTTAGCGTCTATGCAACAAGTTTCTACGCCGGAGCTAGACTTGTGGATGCCGGAAGAATTACATTCTCAGACGTTTTTCGGGTTTTCTTTGCCCTGACAATGGCGGCAATGGCAGTTTCCCAGTCGAGCTCCATGGCTCCAGATTCTAGCAAAGCCAAGTCAGCCACTTCTTCCATATTTGGACTCATTGACAGGAAGTCCAAGATAGACTCCAGCGACGAGTCCGGTGCCAAATTGGATAACGTGAAGGGAGAAATTGAGCTTCGCCATGTGAGCTTCAAATACCCATCTAGACCAGACATGCAAATTTTTCGAGACCTCAGTTTGGCTATTCATTCGGGCAAGACAGTGGCCCTTGTTGGTGAGAGTGGAAGCGGGAAATCGACAGTGATTGCATTGCTGCAAAGATTTTATGACCCAGACTCAGGTGAGATCACTCTTGATGGAATGGAACTTCGAAGGTTAGAGATAAAGTGGTTAAGACAGCAGATGGGGCTGGTGAGCCAAGAACCAGTGTTATTCAACGACACCATCCGTGCCAATATTGCATATGGAAAAGGAGGTGACGCAACCGAAGCTGAAATCATAGCTGCAGCAGAACTAGCCAACGCTCATAAGTTCATCAGTGGGTTACACCAGGGTTATGAGGCAGTAGTGGGGGAGAGGGGGCTGCAGTTATCAGGGGGGCAGAAACAGAGGGTAGCCATAGCACGTGCCATAATAAAGAGTCCAAAGATATTACTGCTGGATGAGGCGACAAGTGCGTTAGACGCAGAGTCAGAGAGAGTAGTTCAGGATGCACTAGACAAAGTGATGGTGAATAGGACTACTGTGGTAGTGGCGCATCGTCTATCCACAATAAAGAACGCGGATGTGATTGCGGTGGTCAAGAACGGAGTCATAGTGGAGAAAGGAAGGCACGAGACGTTGATTACCATTAAAGATGGCTTCTATGCGTCCCTAGTCCAGCTTCATACAAGTGCTTCCACTGTATGA 3852 0.4642 MGQNGLDGAAEHDKATTSQNHTETSTNEENREMAKQKGKADTVPFHRLFSFADSTDTLLMIAGTVGAVGNGLGLPLMALLMGEMIDSFGSNQRSTHVAAQVSKVSLKFVYLAVGMGVAACLQVSCWMVTGERQSARIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFQQLISTFIGGFVVAFIKGWLLALVMMSILPLLVVAGASMALIIGRMASRGQTAYAKAANIVEQTLGSIRTVASFTGEKQAVSKYSKFLVDAYKSGVHEGFVAGLGFGTVMFVFFCGYALAVWFGAKMILERGYNGGTVINVIVAILTASMSLGQATPCLSAFAAGQAAAYKMFETIERKPEIDAYDPNGKTLEDINGDIELKDVYFSYPTRPEELIFNGFSLHIPSGTTAALVGESGSGKSTVISLIERFYDPRSGEVLIDGINLKQLQLRWIRGKIGLVSQEPVLFASSIKDNILYGKEGATIEEVRAAAELANAAKFIDKLPQGYDTMVGDHGTQLSGGQKQRVAIARAIIKNPRILLLDEATSALDAESERIVQEALDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQEVNKESEEPSERQNKNEISLESFRQSSQRRSLRRSISRGSSVGSSSRHSFSVPFGMPTVVNVPEPELEKLDAREELPDVPILRLASLNKPEIPVLLLGCVAAVVNGAILPVFGLLVSSVIKTFYEPPHEMKKDARFWALIFLALGIASLVALPSRGYLFSVAGCKLIQRIRMMCFEKVVNMEVAWFDEPEHSSGVIGARLSADASTVRALVGDALGLLIQNIASTLTGVIIAFVASWELALVILVLIPLIGVNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMKSGVRLGLISGTGFGCSYFLLFSVYATSFYAGARLVDAGRITFSDVFRVFFALTMAAMAVSQSSSMAPDSSKAKSATSSIFGLIDRKSKIDSSDESGAKLDNVKGEIELRHVSFKYPSRPDMQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGMELRRLEIKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISGLHQGYEAVVGERGLQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLITIKDGFYASLVQLHTSASTV 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0260 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 621 IPR027417 -
Lele16g0260 1283 Pfam ABC transporter 1057 1206 IPR003439 GO:0005524
Lele16g0260 1283 ProSitePatterns ABC transporters family signature. 522 536 IPR017871 GO:0005524|GO:0016887
Lele16g0260 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1029 1276 IPR027417 -
Lele16g0260 1283 FunFam ABC transporter B family member 1 373 622 - -
Lele16g0260 1283 SUPERFAMILY ABC transporter transmembrane region 46 367 IPR036640 GO:0005524|GO:0016020
Lele16g0260 1283 SMART AAA_5 410 602 IPR003593 -
Lele16g0260 1283 SMART AAA_5 1065 1258 IPR003593 -
Lele16g0260 1283 Gene3D ABC transporter type 1, transmembrane domain 106 1012 IPR036640 GO:0005524|GO:0016020
Lele16g0260 1283 MobiDBLite consensus disorder prediction 25 39 - -
Lele16g0260 1283 CDD ABC_MTABC3_MDL1_MDL2 1038 1276 - -
Lele16g0260 1283 Pfam ABC transporter transmembrane region 60 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele16g0260 1283 Pfam ABC transporter transmembrane region 716 989 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele16g0260 1283 MobiDBLite consensus disorder prediction 623 670 - -
Lele16g0260 1283 FunFam ABC transporter B family member 9 47 380 - -
Lele16g0260 1283 FunFam ABC transporter B family member 1 1028 1278 - -
Lele16g0260 1283 MobiDBLite consensus disorder prediction 1 39 - -
Lele16g0260 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 717 1003 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele16g0260 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1038 1275 IPR003439 GO:0005524
Lele16g0260 1283 SUPERFAMILY ABC transporter transmembrane region 704 1018 IPR036640 GO:0005524|GO:0016020
Lele16g0260 1283 CDD ABC_6TM_Pgp_ABCB1_D1_like 60 344 - -
Lele16g0260 1283 Gene3D - 1028 1282 IPR027417 -
Lele16g0260 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 619 IPR003439 GO:0005524
Lele16g0260 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 348 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele16g0260 1283 CDD ABC_6TM_Pgp_ABCB1_D2_like 706 1021 - -
Lele16g0260 1283 ProSitePatterns ABC transporters family signature. 1178 1192 IPR017871 GO:0005524|GO:0016887
Lele16g0260 1283 Pfam ABC transporter 402 550 IPR003439 GO:0005524
Lele16g0260 1283 PANTHER ABC TRANSPORTER B FAMILY 19 623 - -
Lele16g0260 1283 MobiDBLite consensus disorder prediction 640 670 - -
Lele16g0260 1283 Gene3D - 381 638 IPR027417 -
Lele16g0260 1283 CDD ABC_MTABC3_MDL1_MDL2 383 621 - -
Lele16g0260 1283 FunFam ABC transporter B family member 1 696 1004 - -
Lele16g0260 1283 MobiDBLite consensus disorder prediction 623 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0260 Lele-ChrLele16 1448161 1453272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0260 36 1277 Calmodulin-binding Proteins AT2G36910 45.267 0.0 1073