Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0256 ATGGGCAAAACCTCTAGTTCGTCGTCGTCGTCGATTAGCAGTAACAGCAACGACCTCGCTTTCTCAACTGCATCTTCTTGTCTCGAACACCTTCCTACAGATCTCAGGCTTGGACTCAGCATTTCACCCATTCCACATCTTCACTCTTGTATGTCAAGGGGGAAACCTTCAGACAAGATGACTCTGGGAAGCAGTAGTTCACCTGCAGCTGAAGAAAATGATCGCAGCCTCTTCGTAAAGGTGTACATGGAAGGGATTCCGATAGGCAGGAAACTGGATTTATTAGCTCAAGATGGCTACCACGAGTTAATAAAGACGCTTCAGCACATGTTTGACACTACCATTATCTTGGGGTCTGAGATGGAGGAAGTGATCCAACCACAAAGATGGCACGTGCTGACCTACGAAGACGAGGAAGGGGACTTGATCATGGTTGGAGATATCCCTTGGGAGATGTTCTTATCCACTGTCAAGAGATTGAAGATCACCAGGGTAGAGGCATTCGGGTGTTAA 513 0.4717 MGKTSSSSSSSISSNSNDLAFSTASSCLEHLPTDLRLGLSISPIPHLHSCMSRGKPSDKMTLGSSSSPAAEENDRSLFVKVYMEGIPIGRKLDLLAQDGYHELIKTLQHMFDTTIILGSEMEEVIQPQRWHVLTYEDEEGDLIMVGDIPWEMFLSTVKRLKITRVEAFGC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0256 170 MobiDBLite consensus disorder prediction 50 70 - -
Lele16g0256 170 Gene3D - 70 169 - -
Lele16g0256 170 ProSiteProfiles PB1 domain profile. 76 167 IPR000270 GO:0005515
Lele16g0256 170 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 165 IPR003311 GO:0005634|GO:0006355
Lele16g0256 170 SUPERFAMILY CAD & PB1 domains 66 163 - -
Lele16g0256 170 Pfam AUX/IAA family 67 164 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0256 Lele-ChrLele16 1420123 1421014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0256 80 162 B3 DNA Binding Superfamily AT4G23980 40.964 5.39e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele16g0256 AUX_IAA 4.9e-30 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0108 06 673505 674928 Lele16g0256 16 1420123 1421014 CCT
Lele07g0311 07 1713794 1716951 Lele16g0256 16 1420123 1421014 CCT
Lele08g0110 08 660820 664631 Lele16g0256 16 1420123 1421014 CCT
Lele05g0292 05 1646232 1647131 Lele16g0256 16 1420123 1421014 CCT
Lele14g2101 14 26639379 26640302 Lele16g0256 16 1420123 1421014 hybridization