Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0254 ATGTATCGAATGGCAGAGAAGCAGGCTGAGTCGATCCGCCCAGGAATCACAGGCAACTCCTCCCATCTTGCTTCCACGTACGGCAATGATTTTGTTGAGCTGGTTTGGCAAAATGGCCAAATTCTGGTGCAAGGAGGGTCATCGAGTAGAACACTGAAGAGGCCTTCTGTCTTTGGTTATTCCATAGACCCCTCCCATGAAGCTTACGGTGAAGATCACAGCATCGCAAAACGAGCAAGGTTAAACAATTTATGCTCGCTTCTGGACTCTTCCCATCAAAATTCCCAACAAACCAATGACCCATGTTCCTATCCGTTTGATTTGAAATGCACCGAAAGCAATAGTTTTAGTAATGAGCCTGGGGATGAATTTTCCAATTTAAGAGCAGAAGGAGAATCTAATTCCAAGCCCACAGGGGGTAATACTCATTTATGCTCAACTTCCTTACAGACCCAGAAGCATGACTTGGGATCTGATCTAAGAGTTGAAAAGATTAATTTCCCCAACTTCCTGAGACCTGCATTGCTTTTCAAATCTACTTATCAGGGAAACAGTGCAAGTCGACACCCAAACAGTGGCGTTTCAGCTAGAGTGGAGGAGATCAAAGCAACTGGTGGCGGTGGTAGCAAAGCTGTTGAACATTCCGTGGTGATTGACTCGGCTAAGGGATCACAGAGTCACAACGGAGTTCATACTGGCCAAACAGCTTTTACTTCTAATAAAGCAAACTCAACAACACCCTTTGATGGAAAAAAGGATCAGAAAATACTCCCTGATGAGCAATCCGAAGCTGTTGGATATGATAGGGCCCTCAAGAGTCAGGGATCACATGGTCAATATTTTCATCAAACCCACAGTAGAAAAGGAAAAACACCTGTTGAGATTTCTAGTGCACCCTTGGTAGCATCTTCTTCTTTGTGCTCTCTTGGAGCCTCGAATGACCCTACTCTTCGTAGTAGGAAACACGAGGACACCGACGACTCAACCTATACAAGTGATAATGATGAAGAAACAGAAGATACGACGACGACAAAGGAAATGCCGGCTCAAGATGGTTCAAGAGGCAAGAGAATCAGGAACACGCATATGCATAATTTATTGGAGAGGAAGCGACGAGATAAGATTAACAAGAAGATGCGTGCATTAAAACAGCTAATACCTAATTGCGACAAGATGGACAATGCTTCAATGCTGGGCGATGCCATCGATTATCTGAAGACCCTCAAGCTTCAGTTGCAGGTATTATCAATGGGAAGTGGGTTTTGCATGCCTCTAATGATGTCGCAGTTAGGCCTAGGCATCCCTTGCGGCCTTCCTCCTCCTCAGTTCCTTCCACAGATGCCTCCTCAAATGCTTCCTGGTTTCCCCAATTACGTGCTTCCCAATATTCAATTCCCAATGTCCCAACAATCTCCTTTCATTTCCATGCCTCCCAAGCCTATCCAACCCTACCTCTCCTCCCACCTAACCACTTCTGATCACGACTCTGACCTTAATGCGAAGCTTCTTTCCGTAGCTATGCCCAAAATGACTCAGGGATGA 1542 0.4533 MYRMAEKQAESIRPGITGNSSHLASTYGNDFVELVWQNGQILVQGGSSSRTLKRPSVFGYSIDPSHEAYGEDHSIAKRARLNNLCSLLDSSHQNSQQTNDPCSYPFDLKCTESNSFSNEPGDEFSNLRAEGESNSKPTGGNTHLCSTSLQTQKHDLGSDLRVEKINFPNFLRPALLFKSTYQGNSASRHPNSGVSARVEEIKATGGGGSKAVEHSVVIDSAKGSQSHNGVHTGQTAFTSNKANSTTPFDGKKDQKILPDEQSEAVGYDRALKSQGSHGQYFHQTHSRKGKTPVEISSAPLVASSSLCSLGASNDPTLRSRKHEDTDDSTYTSDNDEETEDTTTTKEMPAQDGSRGKRIRNTHMHNLLERKRRDKINKKMRALKQLIPNCDKMDNASMLGDAIDYLKTLKLQLQVLSMGSGFCMPLMMSQLGLGIPCGLPPPQFLPQMPPQMLPGFPNYVLPNIQFPMSQQSPFISMPPKPIQPYLSSHLTTSDHDSDLNAKLLSVAMPKMTQG 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0254 513 MobiDBLite consensus disorder prediction 115 150 - -
Lele16g0254 513 MobiDBLite consensus disorder prediction 221 257 - -
Lele16g0254 513 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 419 IPR036638 GO:0046983
Lele16g0254 513 Pfam Helix-loop-helix DNA-binding domain 363 408 IPR011598 GO:0046983
Lele16g0254 513 MobiDBLite consensus disorder prediction 310 356 - -
Lele16g0254 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983
Lele16g0254 513 SMART finulus 365 414 IPR011598 GO:0046983
Lele16g0254 513 PANTHER TRANSCRIPTION FACTOR PIF3 2 483 IPR044273 GO:0003700|GO:0006355
Lele16g0254 513 Gene3D - 355 416 IPR036638 GO:0046983
Lele16g0254 513 MobiDBLite consensus disorder prediction 221 250 - -
Lele16g0254 513 CDD bHLH_AtPIF_like 359 421 - -
Lele16g0254 513 MobiDBLite consensus disorder prediction 272 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0254 Lele-ChrLele16 1413261 1415670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0254 200 474 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 35.390 1.13e-29 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele16g0254 HLH 1.4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2165 13 28296250 28309798 Lele16g0254 16 1413261 1415670 hybridization
Lele14g2102 14 26647944 26650290 Lele16g0254 16 1413261 1415670 hybridization