Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0252 ATGGGGAGGCACTCTTGCTGCTATAAGCAGAAGCTTCGCAAGGGCCTATGGTCCCCTGAGGAGGACGAAAAACTTCTTAGACATATTACTAAGTATGGCCATGGCTGTTGGAGCTCTGTTCCTAAGCAAGCCGGCCTGCAGAGGTGTGGTAAGAGCTGTAGGCTGAGGTGGATCAATTACCTGAGGCCTGATTTGAAGAGAGGAACATTCTCACAGGAAGAAGAAAACCTTATAATTGAACTTCACGCAGTACTGGGAAATAGATGGTCCCAAATTGCGGCGCAATTGCCCGGAAGAACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTAAAGAAGAAACTGAAGCAGAGAGGCATCGACCCTGTTACCCACAAACCACTCTCTGAGGTTCAAAATGGAGACGACAAAGACAAGGAGCTCAGTGAACTGAAACTCCTCAAATCAGAAAGCCCCAATTCAGATGCCATAAAAACCTACACCCCCATCATGGAAGCTTGTTCCAGTTTCAAGTATAACCATAACACAAGTAACACCAATCTGCCAACCAACTGTAGCAGCAAAGAATTGCTTCCAGATGGGTTTACAACGAGCTACGCCACTTCAGGGCTGATGGGGAATTTCCCACTTCAGATGAATTATGCATCCACTGGCGATACCTTCTCTGCTAATTCAAACCCTTCCCAATGGTTTAACCAACCAGGGAGACCAATATTCAATATAAACTCTGAATTTGCTTCCAATTCCATGTCTACTGTTCTTGCGCCTCCGCCACCCACTTCATATCTTGGAGTTCCCAGCGATGATATTTGCGCAGCCTCTTACACTGAGAACGCATCCCAATCTCATTTCTGGGCATTGACAGATTCTGCAAAAGAGACCCAAATTCAGGTGCTGCAAAACCAAACCGAGGAAGCCAAGTGGGGAGATTGCGTTCAAAACCCAATCTTAATGCTGCCCGTGACTCATCTGGTATCTGATAATTTAGGGGTCATGTTGCCCCATAACAAGCCGCAAGAAGAACCCTCACAGACCTGTAACATGTTTTCCAAGGACATTCACAAGCTCACGGCTGCCTTTGGACATATATAG 1095 0.4594 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLKQRGIDPVTHKPLSEVQNGDDKDKELSELKLLKSESPNSDAIKTYTPIMEACSSFKYNHNTSNTNLPTNCSSKELLPDGFTTSYATSGLMGNFPLQMNYASTGDTFSANSNPSQWFNQPGRPIFNINSEFASNSMSTVLAPPPPTSYLGVPSDDICAASYTENASQSHFWALTDSAKETQIQVLQNQTEEAKWGDCVQNPILMLPVTHLVSDNLGVMLPHNKPQEEPSQTCNMFSKDIHKLTAAFGHI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0252 364 Gene3D - 11 67 - -
Lele16g0252 364 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele16g0252 364 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele16g0252 364 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lele16g0252 364 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele16g0252 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele16g0252 364 FunFam Myb transcription factor 11 67 - -
Lele16g0252 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele16g0252 364 Gene3D - 69 144 - -
Lele16g0252 364 CDD SANT 17 61 IPR001005 -
Lele16g0252 364 CDD SANT 69 109 IPR001005 -
Lele16g0252 364 SMART sant 13 63 IPR001005 -
Lele16g0252 364 SMART sant 66 114 IPR001005 -
Lele16g0252 364 PANTHER MYB DOMAIN PROTEIN 55 1 273 - -
Lele16g0252 364 FunFam MYB transcription factor 68 140 - -
Lele16g0252 364 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0252 Lele-ChrLele16 1399090 1400381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0252 1 237 MYB Transcription Factor Family AT4G01680 62.605 4.73e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele16g0252 Myb_DNA-binding 1.6e-14 CL0123