Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0238 ATGAGAAGCGGCTACGGATTGTTAAATCACGCAGTCAAGATGTTCCACGCGTTGTCCAAAGACGGTCTCACCCACGAGGCTTTGGAGCTGTTCGGTCAGATAAAAGACAAAGGTCAAATGCCCGACGTGGTGGCTCACACGGCCATCATCGAGGCCTATGCCAATGCTGGTCAGCCCAAGGTGGCCCTCAAAGTTTATATGCACATGATGGTTTCTGGGGTGTCTCCCAATGCTTATACCTACACTGTTCTTATCAAGGGACTTGCTTCTGATTCCAAGTTTTTGGGAGATGCCAAGAAGTGTGTGCTGGAGATGATGGAAAAGGGCATGAAACCCAATGCTGTGACTTACACGGCCGTGTTCGAGGCATTTGCTAGGGATGACAAAACGGAAGAGGCCACAGAGCTTTTGGAGCAAATGAAGACCAAGGGATTTGTCGCTGACGAGAAGGCTGTGAGGGAAGTCCTGAGTAGCGAGAGGGGTCCCATTTTCAGAACCGTCTTGAGTATTCTTTTTGGCAGATTGCGAACCAATGCATATTTTAGTGACCTCAAAAGAATTCGAACTCACATTCAAAGGAAAGTGCTAGTCTTATCCAAAACCTCTCAGCCAATCATACCAGCTCGCATTAGCTCATCCATTCATTTGAGCCATGTTTGA 660 0.4773 MRSGYGLLNHAVKMFHALSKDGLTHEALELFGQIKDKGQMPDVVAHTAIIEAYANAGQPKVALKVYMHMMVSGVSPNAYTYTVLIKGLASDSKFLGDAKKCVLEMMEKGMKPNAVTYTAVFEAFARDDKTEEATELLEQMKTKGFVADEKAVREVLSSERGPIFRTVLSILFGRLRTNAYFSDLKRIRTHIQRKVLVLSKTSQPIIPARISSSIHLSHV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0238 219 Pfam PPR repeat family 112 150 IPR002885 -
Lele16g0238 219 Pfam PPR repeat family 41 89 IPR002885 -
Lele16g0238 219 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 112 IPR002885 -
Lele16g0238 219 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 42 76 IPR002885 -
Lele16g0238 219 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 14 155 - -
Lele16g0238 219 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Lele16g0238 219 Gene3D Tetratricopeptide repeat domain 8 91 IPR011990 GO:0005515
Lele16g0238 219 Gene3D Tetratricopeptide repeat domain 92 161 IPR011990 GO:0005515
Lele16g0238 219 TIGRFAM PPR: pentatricopeptide repeat domain 79 114 IPR002885 -
Lele16g0238 219 TIGRFAM PPR: pentatricopeptide repeat domain 44 78 IPR002885 -
Lele16g0238 219 TIGRFAM PPR: pentatricopeptide repeat domain 14 42 IPR002885 -
Lele16g0238 219 TIGRFAM PPR: pentatricopeptide repeat domain 115 149 IPR002885 -
Lele16g0238 219 Pfam PPR repeat 14 38 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0238 Lele-ChrLele16 1329187 1330234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0238 6 174 Organic Solute Cotransporters AT5G03560 71.006 3.00e-82 247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0238 16 1329187 1330234 Lele05g0286 05 1605925 1606784 CCT
Lele16g0238 16 1329187 1330234 Lele06g0104 06 636936 637712 CCT
Lele16g0238 16 1329187 1330234 Lele07g0303 07 1663604 1664402 CCT
Lele16g0238 16 1329187 1330234 Lele08g0105 08 621733 622509 CCT
Lele13g2179 13 28365227 28367177 Lele16g0238 16 1329187 1330234 hybridization