Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0233 ATGTCTTCCTCAAAGCGTAGCCAATCGTCCAGCAATTCAGGAAGATCAAGACACAGTGCGAGGATTATTGCTCAGACCACCGTGGATGCAAAACTTCATGCGGATTTTGAGTATGGTAGCTCCTTTGACTACTCCAGTTCAGTGCGTGTTTCGAGTACCCTTAGTGCTGGAGAGCATCAGTCAAGTTCTGACAGGGTAACAACGGCTTACCTCCAAACCGTACAGAAGGGCCTACTGATCCAGCCTTTTGGCTGCTTGCTAGCCTTAGATGACAAAACATGCAAAGTCATTGCCTACAGTGAGAATGCACCTGAAATGCTTACCACGGTTACTCAAGCTGTGCCGAATGTTGGTGACCAGCCTGCTCTTGCAATGGGAACTGACATTAGAAGCATTTTTACTGCCCAAAGTGCTTCTGCCTTGCAGAAGGCAATAGGATTTGGAGAGGTCTCACTTCTTAACCCCATCCTTGTCCATTGCAAGACTTCTGGGAAGCCTTTTTATGCAATTGTCCATCGTGTCACTGGTAGTTTGATCATTGACTTTGAGCCTGTCAAGCCTTATGAAGTTCCAACGACTGCGTCAGGTGTCCTCCAATCTTACAAGCTTGCCTCCAAAGCAATTACCCGATTACAAGCATTGCCTAGTGGGAGCATGGAAAGGCTCTGTGATGTAATGGCTCATGAGGTTTTTGAACTCACAGGTTATGACAGGGTGATGGTGTATAAATTTCATGATGATGATCATGGAGAAGTGGTAACTGAGGCCAAAAAGCCAGGCTTAGAGTCATATCTGGGCTTGCATTATCCAGCCACTGATGTTCCACAGGCTACACGCTTTTTATTCATGAAGAACAAGGTTCGTATGATAGTTGATTGTCGGGCAAAACATGTGGGGGTTCTTCAAGATGAAAACCTTCCACATGATTTAACCTTCTGTGGTTCAACCTTGAGGGCTCCTCACAGTTGCCATGTGCAATATATGCAGAACATGAATCTAATTGCCTCCCTGGTTATGGCAGTTGTGGTCAATGACAGAGATGAAGATGGAGATAGCTCTGATTCTGTACAACCACAGAAGAGAAGGAGACTCTGGGGCTTAGTAGTTTGCCATAATTATACCCCCCGGTTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTCCTGGCTCAAGTATTTGCTATCCATGTTAACAAAGAATTAGAGTTGGAATATCAGATGATTGAAAAGAACATCTTGCGAACCCAGAGTCTCCTGTGTGATATGCTGATGCGTGATGCACCCCTAGGGATTATATCACAGAGCCCAAATATAATGGATCTCGTGAAATGTGATGGAGCTTGCCTCTTGTATAATGACAAGGTATCGATATTAGGAGTGACGCCAAGTGAATCCCAGATACGAGAGATAGCTTTATGGCTGTCAGAGTGTCATAAGGATTCCACTGGTTTTAATACAGATAGCTTGTCTGATGCAGGGTTCCCTGGGGCCGCTGCTCTTGGTGATATGGTATGTGGAATGGCAGCTGTGAGAATAGCCTCAAAAGACATGGTTTTCTGGTTTCGGTCACATGCTGCTGCAGAAATGCGATGGGGTGGTGCAAAGCATCAACCTGGTGAAGGGGATGATGTTCGAAGGATGCATCCAAGGTCATCATTCAAGGCGTTCCTTGACGTGGTGAAGTCAAGAAGTTTGCCATGGAAAGACTATGAAATGGATGCTATCCACTCCTTGCAGCTCATACTGAGAAATGCATTCAAAGAGACACAGGTTATGGACACAAGCACAAATGCCATCAATTCAAGACTAAGTGTTTTGAAAGTTAAAGGAATGCAAGAACTGGAAGTAGTGACAAGTGAGGTGGTTCGATTAATTGAAACGGCAACTGTACCAATTTTGGCAGTTGATGTTGATGGACTGGTCAATGGGTGGAATTCAAAAATTTCTGAGTTGACATGTCTTCCAGTCGATGAAGCTATTGGAAAGCATTTGCTCACACTTGTTGAAGACTCTTCAGCTGATAGAGTCAAGAAGATGCTTGCCATGGCACTGCAAGGTGAAGAAGAGCAGAATGTTCAATTTGAGATCAAGACACATGGGTCTAAGGCTGACTCTACTCCTATCAGCTTAGAAGTTAATGCTTGTGCAAGTCGGGATCTTCAAGATAATGTTGTTGGGGTTTGTTTTGTGGCTCAAGATATAACTGCTCAGAAGACAGTTATGGACAAATTCACTCGAATTGAAGGGGATTACAAGGCAATTGTCCAGAACCCAAATCCTTTGATTCCCCCAATATTTGGTACAGATGAATTTGGCTGGTGTTGTGAATGGAATCTGGCTATGACAAAGTTAACTGGATGGGAGCGAGAGGAGGTGATGAATAAGATGCTTTTAGGGGAAGTGTTTGGTACCCAGATGGTTTGTTGTCGTCTCAAGAATCAAGAAGCTTTTGTTAATTTCGGTATTGTACTTAATAATGCCATGACTGGTTTGGAAACGGAGAAGGTTGCTTTTGGTTTCTTTGCTCGGAATGGCAAGTATGTAGAATGCCTGCTTTCTGTGAGCATGAAATTGGATTCAGAGGGAGCAATTACTGGGGTCTTCTGCTTCTTGCAGCTAGCAAGCCCAGAGCTGCAACAAGCATTACATATTCAGCGCCTTTCTGAAAAAACAGCCATGAAGAGACTAAAAGCTTTAACTTATATGAAAAGGCAGATTTGGAATCCTTTATGCGGGATTGTGTTCTCCCGTAAAATGTTGGATGATACTGAATTAGGAACTGACCAAAAGCAGCTTCTGCACATTAGTGCTCAGTGCCAGCGCCAGCTGAGAAAAATCCTTGATGACTCAGATCTTGACAGCATCATTGATGGGTACTTGGATCTGGAGATGGTTGAATTCACTCTGCATGATGTATTGGTTGCCTCCTTTAGTCAAGTGATGACGAAGAGCAATGCAAAGGGCATCGGAATAGTGAATAATGTTGAAGATCGTATCAGGGCAGAAATCTTATATGGTGATAGTCTTAGACTTCAGCAGATCCTTGCTGACTTCTTATCCATTTCCATCAGTTTTACTCCGTCTGGGGGTCAGGTTCTTATGGCGGCCTCTCTAACCAAAGATCACTTGGGAAAATCTGTCCAGCTTGCCAAGTTGGAGCTCAGCATAACACATACTGGTAGTGGGGTGACAGAAGCATTGCTGAGCCAGATGTTTGGAAGTGAAGGACATGAATCGGAGGAGGGTGTTAGCCTTCTCATCAGCAGAAAGTTGCTAAAGCTCATGAACGGAGATGTGCGTTATCTTAGGGAAGAGGGCAAATCATCTTTCATATTATCTGTTGAACTTGCTGTGGCCCACAAATGA 3366 0.4406 MSSSKRSQSSSNSGRSRHSARIIAQTTVDAKLHADFEYGSSFDYSSSVRVSSTLSAGEHQSSSDRVTTAYLQTVQKGLLIQPFGCLLALDDKTCKVIAYSENAPEMLTTVTQAVPNVGDQPALAMGTDIRSIFTAQSASALQKAIGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPTTASGVLQSYKLASKAITRLQALPSGSMERLCDVMAHEVFELTGYDRVMVYKFHDDDHGEVVTEAKKPGLESYLGLHYPATDVPQATRFLFMKNKVRMIVDCRAKHVGVLQDENLPHDLTFCGSTLRAPHSCHVQYMQNMNLIASLVMAVVVNDRDEDGDSSDSVQPQKRRRLWGLVVCHNYTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQMIEKNILRTQSLLCDMLMRDAPLGIISQSPNIMDLVKCDGACLLYNDKVSILGVTPSESQIREIALWLSECHKDSTGFNTDSLSDAGFPGAAALGDMVCGMAAVRIASKDMVFWFRSHAAAEMRWGGAKHQPGEGDDVRRMHPRSSFKAFLDVVKSRSLPWKDYEMDAIHSLQLILRNAFKETQVMDTSTNAINSRLSVLKVKGMQELEVVTSEVVRLIETATVPILAVDVDGLVNGWNSKISELTCLPVDEAIGKHLLTLVEDSSADRVKKMLAMALQGEEEQNVQFEIKTHGSKADSTPISLEVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNLAMTKLTGWEREEVMNKMLLGEVFGTQMVCCRLKNQEAFVNFGIVLNNAMTGLETEKVAFGFFARNGKYVECLLSVSMKLDSEGAITGVFCFLQLASPELQQALHIQRLSEKTAMKRLKALTYMKRQIWNPLCGIVFSRKMLDDTELGTDQKQLLHISAQCQRQLRKILDDSDLDSIIDGYLDLEMVEFTLHDVLVASFSQVMTKSNAKGIGIVNNVEDRIRAEILYGDSLRLQQILADFLSISISFTPSGGQVLMAASLTKDHLGKSVQLAKLELSITHTGSGVTEALLSQMFGSEGHESEEGVSLLISRKLLKLMNGDVRYLREEGKSSFILSVELAVAHK 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0233 1121 CDD PAS 761 872 IPR000014 -
Lele16g0233 1121 Gene3D - 406 579 IPR043150 -
Lele16g0233 1121 CDD PAS 628 734 IPR000014 -
Lele16g0233 1121 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Lele16g0233 1121 ProSiteProfiles PAC domain profile. 690 746 IPR000700 -
Lele16g0233 1121 SMART gaf_1 218 411 IPR003018 GO:0005515
Lele16g0233 1121 Pfam GAF domain 218 401 IPR003018 GO:0005515
Lele16g0233 1121 ProSiteProfiles Histidine kinase domain profile. 901 1120 IPR005467 -
Lele16g0233 1121 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Lele16g0233 1121 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Lele16g0233 1121 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Lele16g0233 1121 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Lele16g0233 1121 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Lele16g0233 1121 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Lele16g0233 1121 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Lele16g0233 1121 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Lele16g0233 1121 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Lele16g0233 1121 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Lele16g0233 1121 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1116 IPR003594 -
Lele16g0233 1121 Gene3D PAS domain 79 321 - -
Lele16g0233 1121 MobiDBLite consensus disorder prediction 1 20 - -
Lele16g0233 1121 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Lele16g0233 1121 FunFam Phytochrome 406 536 - -
Lele16g0233 1121 SMART HKATPase_4 1006 1118 IPR003594 -
Lele16g0233 1121 Coils Coil 398 418 - -
Lele16g0233 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Lele16g0233 1121 Gene3D - 199 562 IPR029016 -
Lele16g0233 1121 PIRSF Phytochrome_conventional 1 1121 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lele16g0233 1121 Pfam PAS fold 750 872 IPR013767 GO:0006355
Lele16g0233 1121 Pfam PAS fold 620 734 IPR013767 GO:0006355
Lele16g0233 1121 PANTHER TWO-COMPONENT HISTIDINE KINASE 888 1109 - -
Lele16g0233 1121 FunFam Phytochrome 613 744 - -
Lele16g0233 1121 Pfam PAS fold 69 185 IPR013654 GO:0006355
Lele16g0233 1121 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Lele16g0233 1121 Gene3D PAS domain 763 875 - -
Lele16g0233 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Lele16g0233 1121 SUPERFAMILY GAF domain-like 198 398 - -
Lele16g0233 1121 Gene3D PAS domain 611 748 - -
Lele16g0233 1121 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 956 1110 IPR036890 -
Lele16g0233 1121 Pfam Phytochrome region 414 589 IPR013515 GO:0006355|GO:0009584
Lele16g0233 1121 SUPERFAMILY GAF domain-like 409 589 - -
Lele16g0233 1121 SMART pas_2 619 685 IPR000014 -
Lele16g0233 1121 SMART pas_2 749 818 IPR000014 -
Lele16g0233 1121 Gene3D - 957 1120 IPR036890 -
Lele16g0233 1121 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Lele16g0233 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 79 186 IPR035965 -
Lele16g0233 1121 TIGRFAM sensory_box: PAS domain S-box protein 624 740 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0233 Lele-ChrLele16 1301194 1305467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0233 1 1121 Histidine Kinase Gene Family AT1G09570 74.800 0.0 1754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0263 05 1481123 1485659 Lele16g0233 16 1301194 1305467 CCT
Lele14g2121 14 26747561 26756630 Lele16g0233 16 1301194 1305467 hybridization