Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0222 ATGGCGTCGGTTGGGGTAGCTCCAACGTCAGGTGTAAGAGAACCCACTGGTCATACAGCAGGTGTTGATAGACTGCCTGAGGAGATGAACGATATGAAAATTAGGGACGATAAAGAAATGGAAGCCACAGTTGTTGATGGTAACGGAACGGAGACTGGTCACATTATTGTCACAACCATCGGGGGTAGAAATGGCAAGCCGAAGCAGACGATAAGCTATATGGCAGAGCGTGTTGTTGGCCACGGATCATTTGGAGTTGTCTTTCAGGCAAAGTGCTTGGAGACTGGTGAAACTGTTGCCATAAAAAAGGTTCTTCAAGATAAAAGGTACAAGAACAGGGAGCTGCAAACAATGCGTCTCCTTGACCACCCAAATGTTGTCTCTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAGGATGAATTATACCTTAATCTGGTACTTGAGTATGTTCCTGAAACTGTTCATCGTGTGATCAAACATTACAACAAGTTGAATCAAAGGATGCCGTTGATATATGTTAAACTCTACACATACCAGATCTTTAGGGCATTAGCTTATATTCATCGATGTATTGGAGTCTGTCATCGCGATATCAAACCCCAAAATCTGTTGGTCAATCCTCACACCCACCAGGTTAAATTGTGTGATTTTGGGAGTGCAAAAGTGTTGGTAAAAGGGGAACCAAATATTTCGTACATATGTTCTAGATATTATAGAGCTCCTGAGCTTATATTTGGAGCAACTGAGTATACTTCAGCCATTGACATCTGGTCTGCTGGTTGCGTTTTGGCTGAGTTGCTTCTTGGACAGCCTTTATTTCCTGGGGAGAGCGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTTTGGGCACACCAACAAGGGAAGAGATTAAGTGCATGAATCCTAACTATACAGAATTTAAATTCCCTCAGATAAAAGCTCATCCGTGGCACAAGATTTTCCATAAGCGTATGCCTCCAGAAGCTGTTGATTTGGTTTCTAGACTGCTACAATACTCCCCTAATCTACGGTGCACAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAGCTTCGTGATCCAAACATTCGGTTGCCAAACGGACGTTTCCTTCCGCCTCTATTCAACTTCAAATCTCATGAACTGAAGGGAGTTCCAGCAGAGATTCTCGTAAAATTGATTCCAGAGCATGCGAGGAAGCAATGCCCGTTTCTTGGGTTGTGA 1230 0.4309 MASVGVAPTSGVREPTGHTAGVDRLPEEMNDMKIRDDKEMEATVVDGNGTETGHIIVTTIGGRNGKPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLIYVKLYTYQIFRALAYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTSAIDIWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNIRLPNGRFLPPLFNFKSHELKGVPAEILVKLIPEHARKQCPFLGL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0222 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lele16g0222 409 CDD STKc_GSK3 68 360 IPR039192 -
Lele16g0222 409 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0222 409 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0222 409 FunFam Glycogen synthase kinase-3 beta 57 152 - -
Lele16g0222 409 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Lele16g0222 409 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0222 409 MobiDBLite consensus disorder prediction 1 24 - -
Lele16g0222 409 SUPERFAMILY Protein kinase-like (PK-like) 72 383 IPR011009 -
Lele16g0222 409 Gene3D Transferase(Phosphotransferase) domain 1 153 401 - -
Lele16g0222 409 FunFam Shaggy-related protein kinase kappa 153 401 - -
Lele16g0222 409 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 37 403 - -
Lele16g0222 409 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0222 Lele-ChrLele16 1232394 1235599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0222 79 385 MAP Kinase Gene Family AT2G43790 34.796 1.82e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lele16g0222 Pkinase 7e-65 CL0016