Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0217 ATGGGGAGTGGTGATTTAATTCCAATACTGAGCATGATTCTAGTGCAGCTAGGTTATGCAGGCATGACCATTTCCTCCAAGCTCTCTTTACAGTCTGGCATGAACCCTCTTGTTCTCGTGGCTTATCGCCAACTCTTTGCCACTGCATTCATTGCTCCTTTAGCCTTTTGCTTCGAACGGAAAAAGGTTTGCAAGTTGACTATGCCCATTACATTTCAAATATTGTTATGTTCCTTGACGGGAGTTACAGTAAACCAGATACTGTACTTCGTGGGGCTAAAATATTCCCCCGCTACAACTGCATCTGCACTCACCAATTTGCTCCCGGCTTTCACTTTTATTCTTGCTGTCCTCTCCGGGTACCGGCGGAAGTGTGTGAGAATCAAGACGAAAGCTGGGCAAGCTATGGTGTTAGGGACTGTTCTGGGTGTTGGTGGAGCGCTTATTTTATCATTTTACCATGGCAAAGCCATCAATCTCGGCCGATCTGGGATTCACTGGGAATATGCGGAGAAAGTTGGACGATTAAGCTCCATCTCCGAAACAAATTCATTCCTTGGTCCTCTCTTAGTGATTGGGAGTGCTCTTATTTGGGCTCTATGGTTCATAATCCAAGCAAACTTGTGCAAGAAGTATCCAGCTCCATACAAGAGCACTACCTACATGTGTTTTATGGCAAGCATACAATGCGCGGTCATTGCTTTGTGTTTTGAACGCAAACCCTCAGCTTGGTCGCTTGTCAATTCTGTGAGACTCACGTCTGCACTTTATGCGGGTATTGTGTGCACTGGGGTAGCTTGTAGCCTAATGTCGTGGACTATTGAGAGGAAAGGCGCTCTTTTTGTGTCCGCGTTCAGCCCGTTGCAGCTCGTCATCACTGCTATTGTCAGTTGGGCCTTACTTGAGGAGAAGTTACATGCTGGAACGGCCATAGGGTCCGTCTTGATAGTTTTGGGGCTGTATTCTGTCTTGTGGGGAAAGAGCAAAGTTGGACACGTAATTCAAAACACTGAAGAAGAAGAAGCGTTCAATCAGAATGGAAACGAGTTACACCTGGCCCATTTTGCTGCCGATCTTGGTCCAGTTGTTTGGAAGATTGCTGCAAGGAAAATCAGCAGTGTTTTACCAGTTGGACAAGAATTTGATGGCCTGGTTCTCCAACCTTCTTTTACGGTTCGCCTTCGACAGCTCATTCTTCTTCTGTCCTCCTCTCTAAATCCATCGCGCGTTGTCCTCCATCTAAGCGAAGAGATGGGGCTGTCTTTCACCAAACTGTTTAGTCGACTCTTTGCAAAGAAAGAGATGCGTATTCTCATGGTAGGTCTTGATGCTGCTGGTAAGACCACCATCTTGTACAAGCTCAAGCTGGGAGAGATCGTGACTACCATTCCTACAATCGGATTTAATGTGGAGACTGTGGAATACAAAAACATTAGCTTCACGGTCTGGGATGTAGGAGGCCAAGACAAGATTCGTCCTCTATGGAGACACTACTTCCAAAATACCCAGGGGCTTATCTTTGTGGTTGATAGCAACGATCGTGATCGTGTTGTCGAGGCTAGAGATGAGCTCCACCGGATGTTGAATGAGGATGAGTTGAGAGATGCGGTGCTGCTTGTCTTTGCCAACAAGCAAGATCTCCCAAATGCCATGAATGCTGCAGAAATCACAGACAAACTCGGTCTTCATTCTCTTCGTCAACGCCACTGGTATATCCAGAGCACATGTGCCACTTCTGGGGAAGGACTCTACGAGGGACTGGATTGGCTTTCCAACAACATAGCCAACAAGGCTTGA 1797 0.4663 MGSGDLIPILSMILVQLGYAGMTISSKLSLQSGMNPLVLVAYRQLFATAFIAPLAFCFERKKVCKLTMPITFQILLCSLTGVTVNQILYFVGLKYSPATTASALTNLLPAFTFILAVLSGYRRKCVRIKTKAGQAMVLGTVLGVGGALILSFYHGKAINLGRSGIHWEYAEKVGRLSSISETNSFLGPLLVIGSALIWALWFIIQANLCKKYPAPYKSTTYMCFMASIQCAVIALCFERKPSAWSLVNSVRLTSALYAGIVCTGVACSLMSWTIERKGALFVSAFSPLQLVITAIVSWALLEEKLHAGTAIGSVLIVLGLYSVLWGKSKVGHVIQNTEEEEAFNQNGNELHLAHFAADLGPVVWKIAARKISSVLPVGQEFDGLVLQPSFTVRLRQLILLLSSSLNPSRVVLHLSEEMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0217 598 ProSiteProfiles small GTPase Arf family profile. 428 594 - -
Lele16g0217 598 SMART sar_sub_1 418 594 IPR006689 GO:0003924|GO:0005525
Lele16g0217 598 FunFam ADP-ribosylation factor 1 418 598 - -
Lele16g0217 598 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 328 - -
Lele16g0217 598 CDD Arf1_5_like 435 593 IPR045872 GO:0003924
Lele16g0217 598 PANTHER ADP RIBOSYLATION FACTOR-RELATED 424 593 IPR024156 GO:0005525
Lele16g0217 598 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 153 - -
Lele16g0217 598 Gene3D - 421 598 IPR027417 -
Lele16g0217 598 SMART arf_sub_2 418 598 - -
Lele16g0217 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 596 IPR027417 -
Lele16g0217 598 SMART rab_sub_5 435 597 - -
Lele16g0217 598 Pfam ADP-ribosylation factor family 422 594 IPR006689 GO:0003924|GO:0005525
Lele16g0217 598 TIGRFAM small_GTP: small GTP-binding protein domain 433 567 IPR005225 GO:0005525
Lele16g0217 598 Pfam EamA-like transporter family 186 324 IPR000620 GO:0016020
Lele16g0217 598 Pfam EamA-like transporter family 7 151 IPR000620 GO:0016020
Lele16g0217 598 PRINTS GTP-binding SAR1 protein signature 436 459 IPR006689 GO:0003924|GO:0005525
Lele16g0217 598 PRINTS GTP-binding SAR1 protein signature 464 488 IPR006689 GO:0003924|GO:0005525
Lele16g0217 598 PRINTS GTP-binding SAR1 protein signature 536 557 IPR006689 GO:0003924|GO:0005525
Lele16g0217 598 PRINTS GTP-binding SAR1 protein signature 491 516 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0217 Lele-ChrLele16 1209090 1217213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0217 1 327 Nodulin-like Gene Family AT1G09380 54.878 3.44e-122 364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0217 16 1209090 1217213 Lele16g0217 16 1209090 1217213 ECH
Lele13g2204 13 28470134 28473979 Lele16g0217 16 1209090 1217213 hybridization
Lele14g2141 14 26860087 26863851 Lele16g0217 16 1209090 1217213 hybridization