Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0203 ATGCTTCGAGTTCGAGAACTGGCGCCTCCGTTCCGTTCATGTGATCAGGCTTCACTTTTCTTCTTCTTACTTTTGCAGGATTTCCAGGGATTCTTAAATGACTTGCAAGATTGGGAACTTTCTAGGAAGGACAAAGCTCGAAAAATGAAGTCACAAGTTCCGCACAAGGAAAAAGTTGTGGGGGAGACAGCATCAAGAGGGGAAACTTTATCGGTTGATTTTACGAAAAGTACTTCAGGACAAAACGATTTCTCAAGATATAAAGATTCTTTTGATCATGTCCATGGTAGTCTCGCCACTGAAGATGTTCCCAATGCTGCTTCAGAAAAAGAACTGGGTAATGAATACTTCAAGCAGAAGAAGTTTAAGGAAGCTATTGACTGCTATTCAAGAAGTATTACCTTCTCACCAACAGCTGTGGCACATGCAAATAAAGCAATGGCCTTTATCAAACTCAGAAGATTTCAACAGGCTGAGGATGACTGTACGGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGTCGAGCAACAGCTAGAAAAGAACTTGGGAAACTTAAAGAAGCAATGGAGGATGCTGAATTTGCTCTGCGCTTGGAACCTGAAAATCAAGAAATCAAGAAACAATTTGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCAGAAAGCATCTGGAGCTCTGAGAAGCTCTCTACAGGGAAATCAAAAGGTGGGAAAGTCAGAGACAAATATTGATGGGGGAACCATCCATCCTGTTCCAAACGGTACTAAAAGATCAGGGGCTGCTGACATTCAAGATCACACAAAGAGCAATGATAAAAAGGTTCCTGCAAAAGCAGTGCTCAGGTTTGAGGAACTAGATAGCAATGAGAAAAGAGCTGAAGGAAAGACTGGAGGACAAGAAATTAGTCATAACAGAATTAACAAGCAAGAATTGAAGGAATCCGTTCAACATCTTGCTTCATATGTATCTTCACGAGTCATGGCTGAAGCTGCAAGAAATATAACACCGCCAAATTCAGCTTATCAGTTTGAGGTCTCATGGAGAGGGTTTTCAGGTGATCCTGCCCTGCAGGCTCGTTTGTTAAAGGCCATATCTCCTCAAGATTTACCAAAGATATTAAAAAATGCCTTATCTTCTTCGCTACTAATGGACGTCATTAAGTGTGTGGCATCCTTTTTCACTGAAGACACACCTCTGGCTGTCAGTTACATAGAGCACTTGACCAAGGTTTCAAGATTTGACATGCTCATTATGTGTCTTACATCAACAGATAAGCATGATCTCCGCAAGATCTGGGAGGAAGTGTTCTGCAGCGAGGCAACTCCAATAGAGTATGCAGAGATTCTTGACAACCTCCGATCCAAATACTGCATTGAACATTGA 1401 0.4118 MLRVRELAPPFRSCDQASLFFFLLLQDFQGFLNDLQDWELSRKDKARKMKSQVPHKEKVVGETASRGETLSVDFTKSTSGQNDFSRYKDSFDHVHGSLATEDVPNAASEKELGNEYFKQKKFKEAIDCYSRSITFSPTAVAHANKAMAFIKLRRFQQAEDDCTEALNLDDRYIKAYSRRATARKELGKLKEAMEDAEFALRLEPENQEIKKQFADIKSLYENEILQKASGALRSSLQGNQKVGKSETNIDGGTIHPVPNGTKRSGAADIQDHTKSNDKKVPAKAVLRFEELDSNEKRAEGKTGGQEISHNRINKQELKESVQHLASYVSSRVMAEAARNITPPNSAYQFEVSWRGFSGDPALQARLLKAISPQDLPKILKNALSSSLLMDVIKCVASFFTEDTPLAVSYIEHLTKVSRFDMLIMCLTSTDKHDLRKIWEEVFCSEATPIEYAEILDNLRSKYCIEH 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0203 466 Coils Coil 179 199 - -
Lele16g0203 466 SUPERFAMILY TPR-like 102 218 IPR011990 GO:0005515
Lele16g0203 466 Gene3D Tetratricopeptide repeat domain 96 204 IPR011990 GO:0005515
Lele16g0203 466 ProSiteProfiles TPR repeat profile. 106 139 IPR019734 GO:0005515
Lele16g0203 466 Pfam Potential Monad-binding region of RPAP3 342 431 IPR025986 -
Lele16g0203 466 PANTHER OS05G0129900 PROTEIN 26 465 - -
Lele16g0203 466 ProSiteProfiles TPR repeat profile. 173 206 IPR019734 GO:0005515
Lele16g0203 466 MobiDBLite consensus disorder prediction 235 279 - -
Lele16g0203 466 Pfam Tetratricopeptide repeat 110 138 IPR001440 GO:0005515
Lele16g0203 466 Pfam Tetratricopeptide repeat 174 206 IPR019734 GO:0005515
Lele16g0203 466 SMART tpr_5 106 139 IPR019734 GO:0005515
Lele16g0203 466 SMART tpr_5 173 206 IPR019734 GO:0005515
Lele16g0203 466 SMART tpr_5 140 172 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0203 Lele-ChrLele16 1153178 1157442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0203 84 210 Calmodulin-binding Proteins AT3G25230 31.944 2.10e-09 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2220 13 28532522 28533430 Lele16g0203 16 1153178 1157442 hybridization
Lele14g2153 14 26910274 26914521 Lele16g0203 16 1153178 1157442 hybridization