Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0201 ATGGATCATAATTACAGGTTCAACGAGCATGGCCTCCGCCTCCAAGCACCCTCCGGATCAGATCTCTTCTTCAAGACCCATATCGCCAATCACCCTCTTTATCCTAACTTGCTCTCTGCCTACATAAACTGCCAAAAGGTCGGAGCCACCCCAGAAAGAGTATCCCTTCTTGAAGAAATAGGGCAGCAACACCACCTCGTTAATAATCCTCGTGAGATAGGCGACGACCCTGAACTTGACAAGTTCATGGAATCATACTGTGGAGTTCTACATAGATACGAAGAGGAGCTGTCCAGGCCCTTCGACGAAGCCAACTTGTTTCTCTGCACTATGGAATCAAAACTCCGCAATCTTTGCAACGGAACATTCACAATTTCATCGGCTCCTCTTTCTGATGAGGCAAGTGGGAGTAGAGAGAAGGGAATAAGTTGTGGAGAAGCAGAAGCAGGAGAAGGTGTTGAATGTGATGAGAGGCGTTTTGGAGGTGATAAAAAGCTAAGAGAAATGCTGCTTCGCAAGTACAGGGGCTACCTCAGCGGTTTGAGGAAGGAGGTGCTGAAGAAAAAGAAAAAGAATAAGCTTCCAAAGGATGCGAGGATGGCTCTCCTTCAATGGTGGAACTCCCACTACAGATGGCCTTATCCTACGGAAGAGGAGAAATTGAAGCTATCAGAAATGACGGGGCTTGATCAAAAGCAGATCAACAATTGGTTCATCAATCAGAGGAAACGCCATTGGAAACCATCCGAAGATATGCGCATCTCCCTCATGGAAGGTGCGAGTGGTGATGGCATAGGTTGA 801 0.4707 MDHNYRFNEHGLRLQAPSGSDLFFKTHIANHPLYPNLLSAYINCQKVGATPERVSLLEEIGQQHHLVNNPREIGDDPELDKFMESYCGVLHRYEEELSRPFDEANLFLCTMESKLRNLCNGTFTISSAPLSDEASGSREKGISCGEAEAGEGVECDERRFGGDKKLREMLLRKYRGYLSGLRKEVLKKKKKNKLPKDARMALLQWWNSHYRWPYPTEEEKLKLSEMTGLDQKQINNWFINQRKRHWKPSEDMRISLMEGASGDGIG 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0201 266 SMART KNOX2_2 69 120 IPR005541 GO:0003677|GO:0005634
Lele16g0201 266 CDD homeodomain 197 249 IPR001356 GO:0003677
Lele16g0201 266 Pfam KNOX2 domain 73 119 IPR005541 GO:0003677|GO:0005634
Lele16g0201 266 SUPERFAMILY Homeodomain-like 187 256 IPR009057 -
Lele16g0201 266 Pfam ELK domain 166 184 IPR005539 GO:0003677
Lele16g0201 266 SMART KNOX1_2 22 66 IPR005540 GO:0003677|GO:0005634
Lele16g0201 266 ProSiteProfiles ELK domain profile. 165 185 IPR005539 GO:0003677
Lele16g0201 266 ProSiteProfiles 'Homeobox' domain profile. 185 248 IPR001356 GO:0003677
Lele16g0201 266 Pfam KNOX1 domain 25 64 IPR005540 GO:0003677|GO:0005634
Lele16g0201 266 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 254 - -
Lele16g0201 266 SMART ELK_2 165 186 IPR005539 GO:0003677
Lele16g0201 266 Gene3D - 183 257 - -
Lele16g0201 266 ProSitePatterns 'Homeobox' domain signature. 223 246 IPR017970 GO:0000981|GO:0006355
Lele16g0201 266 SMART HOX_1 187 252 IPR001356 GO:0003677
Lele16g0201 266 Pfam Homeobox KN domain 205 244 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0201 Lele-ChrLele16 1137715 1141346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0201 24 262 Homeobox Transcription Factor Family AT1G23380 51.837 2.67e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele16g0201 KNOX2 3.2e-21 No_clan