Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0196 ATGGCTCACACCAGTGACAATGTCGCCGGGGTCGACAACACGTTCAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGGGAGCGTGAGAGGCAGGAAGAGGAGGCTCGATCTAGACCTAAAAACAAAGGTCCTCCAGTGCAGAGGAAACCCTTGAAACATAGAGATTATGAGGTGGACCTTGATTCCCGCTTGGGGAAGACTCAGGTTGTTACGCCAGTTGCACCTCTAAGCCAGCAGGCCGGATACTACTGCTCAGTTTGTGAGTGTGTGGTAAAGGATTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAACGAGCTCTGGGAATGTCTATGCGAGTAGAACGTGCTTCTCTGTCACAGGTTCAGGAACGATTTGAAGTTCTTAAAAAGCGGAAAGCTCTTGGAAGCTTCACAGAGCAAGATCTGGATGATCGGATCTTAAAACAGCAGCAAGAAGAGGAAGAAAGAAAGCGACAGCGACGGGAAAGGAAGAAAGAGAAGAAGAAAGAGAAGGAAGTTGAAGAAGCACCTGAAACAGATCCTGATGTTGCCGCTATGATGGGGTTTGGTGGCTTTCGGTCATCCAAGAAATGA 612 0.4706 MAHTSDNVAGVDNTFRRKFDREEYLERARERERQEEEARSRPKNKGPPVQRKPLKHRDYEVDLDSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLSQVQERFEVLKKRKALGSFTEQDLDDRILKQQQEEEERKRQRRERKKEKKKEKEVEEAPETDPDVAAMMGFGGFRSSKK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0196 203 MobiDBLite consensus disorder prediction 21 44 - -
Lele16g0196 203 Pfam Zinc-finger of C2H2 type 85 109 - -
Lele16g0196 203 Gene3D Classic Zinc Finger 80 117 - -
Lele16g0196 203 MobiDBLite consensus disorder prediction 149 184 - -
Lele16g0196 203 SUPERFAMILY beta-beta-alpha zinc fingers 80 121 IPR036236 -
Lele16g0196 203 FunFam zinc finger matrin-type protein 2-like 79 117 - -
Lele16g0196 203 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 10 203 IPR040107 GO:0000398|GO:0005681
Lele16g0196 203 MobiDBLite consensus disorder prediction 149 203 - -
Lele16g0196 203 MobiDBLite consensus disorder prediction 21 57 - -
Lele16g0196 203 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Lele16g0196 203 Coils Coil 153 182 - -
Lele16g0196 203 Coils Coil 21 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0196 Lele-ChrLele16 1124489 1126698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0196 4 147 C2H2 Transcription Factor Family AT3G05760 79.861 1.47e-83 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele16g0196 zf-C2H2_jaz 1.9e-06 CL0361