LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g0194	ATGGATGAGATCCGGCACTACTCCAGCGGATGCAACGTGCATTATTCATCTCATCACCATTACCCATCTTGCCTGAGAGCGGTAAATATCCGAAACTCGTCCCAGGGGAATTGGTGGAATGACCCTGACACCAAGAGAATGCGAAGATTAGCCAAGTACAGGCTTTACGCGACCGAAGCCCTCTTATTCTCACCCGCCAAAAAAAAAACTCATATCCAGCGTCCCAGACTTCAAAGCGGCAAAGCGGACTGTGGAATCGGAATGGGAAGTGGGAAGAAACACGATCTGGAGCTTGAGAAAGTTCGTTTAGTGAGCTTGGCTCTTGATTTCGGCTTCGACGAAGAACCCGCCAAAAAATGTTTGGATCGGCTTGTCGCCTTACGTCTCTCCATGCACTGGCTTCAATTTCTCTACTTGTATTCTTTAGCTGATTCAATGCAAGATACCGAGGAATGGGATGATTTACAGGCAATAGAATCAGAAGTTTGTGGAACTTTGACTAACCTGCTTGATAAAAATGTTGTGGGGTGTAAGTATGAAGATAATGGCATTTCAGGAGGTTGCATCAATATTATCAAGGATTCTCCGGAACCTCAGAAAAACCAGAAAGTGGTGGAGTTGGTTTCGAGTGATGAGGATATGGACTTTAGTATTTCAAGGGAAAAATATGCACCTCCAGGGTCTTATTTGAATGATAATGTATTTGCAGGTCAACAGTCTCCAATATCAGGGGTAAGAACAAATTTGATGGACTGCAGAAGTAGCATCACTCAGGGCTCAATTTCTTCAACTGCCAGCAAAAGAAGGTTGTCAGAACCTAAGGATGAAAACCATACTCTCACTTATGAAGAATTACAGGATCTAGATAACATTGAAATGGCAGATGTTGTTATATTTGGAAATAGGACATTTCGACCATTTCAGCATCAAGCTTGTAAAGTAGCTTTGGCAAAGCAAGATTGTTTTATTCTTATGCCAACGGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAATCAGGTGTTACAGTAGTTGTATCTCCCTTACTTTCACTCACTCAGGACCAGATAATCACGTTGAACCTCAAGTTTGGAATACCAGCTACATTTTTGAATTCTCAGCAAACTACTTCACAAGCAGCAGCTGTTTTTCAAGAGCTAAGGCAAGATTTAGTTCCATGATACCTTAAGCTGAACTTTCCGGATGTGCCTGTCATGGCATTGACTGCCACTGCAACCCACTCTGTCCGCGAGGACATCTTAAGTGCCTTAAGAATCCCCCGTGCAATTGTTCTTGAAAGAAGCTTCGATAGGCCAAACTTGAAGTATGAAGTCATTGTTAAGACAAAGGAGCCGCTAAAGCATCTTGGGAAGCTAGTATTGGATCGCTTCAAGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTTTCAAAATATTTGAACCAGAAATGTAACATTAAGACAGTGTATTACCATGCTGGCTTGGCTGCCCGCCAAAGAGCTGCTGTTCAAAAGAAATGGCACGAGGGAGAGGTCCATATTGTTTGTGCAACTATTGCTTTTGGAATGGGGATAGACAATCCTGATGTTCGCTTTGTCATCCACAATACGTTGTCTAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCCGGAAGAGATAATCTACCTGCAGTTTGCATTGCTCTCTACCAGAAGAAGGATTTTAGTAGAGTCGTATGCTTGATCAGAAATGGCCAAGGTTATAAAAGGGAAAGTCTTAAGTCGGCAATCGCTCAAGCCAAAAAGATGCAACAATATTGCGAACTAAAGGACGAATGCCGGAGGCAAGTTTTACTCAAACACTTTGGAGAATCTCTTGACAGAAAAGCCTGCAAATATGGATCTAACCCCTGTGATAACTGCCTCAAGAATGGTCTGTGA	1953	0.4245	MDEIRHYSSGCNVHYSSHHHYPSCLRAVNIRNSSQGNWWNDPDTKRMRRLAKYRLYATEALLFSPAKKKTHIQRPRLQSGKADCGIGMGSGKKHDLELEKVRLVSLALDFGFDEEPAKKCLDRLVALRLSMHWLQFLYLYSLADSMQDTEEWDDLQAIESEVCGTLTNLLDKNVVGCKYEDNGISGGCINIIKDSPEPQKNQKVVELVSSDEDMDFSISREKYAPPGSYLNDNVFAGQQSPISGVRTNLMDCRSSITQGSISSTASKRRLSEPKDENHTLTYEELQDLDNIEMADVVIFGNRTFRPFQHQACKVALAKQDCFILMPTGGGKSLCYQLPATLQSGVTVVVSPLLSLTQDQIITLNLKFGIPATFLNSQQTTSQAAAVFQELRQDLVPXYLKLNFPDVPVMALTATATHSVREDILSALRIPRAIVLERSFDRPNLKYEVIVKTKEPLKHLGKLVLDRFKNQCGIVYCLSKSECVEVSKYLNQKCNIKTVYYHAGLAARQRAAVQKKWHEGEVHIVCATIAFGMGIDNPDVRFVIHNTLSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCLIRNGQGYKRESLKSAIAQAKKMQQYCELKDECRRQVLLKHFGESLDRKACKYGSNPCDNCLKNGL	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g0194	650	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	282	579	IPR027417	-
	Lele16g0194	650	Gene3D	-	441	649	IPR027417	-
	Lele16g0194	650	CDD	SF2_C_RecQ	441	574	-	-
	Lele16g0194	650	Pfam	RecQ zinc-binding	577	646	IPR032284	-
	Lele16g0194	650	SMART	ultradead3	300	449	IPR014001	-
	Lele16g0194	650	CDD	DEXHc_RecQ	298	440	-	-
	Lele16g0194	650	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	455	613	IPR001650	-
	Lele16g0194	650	Pfam	Helicase conserved C-terminal domain	457	564	IPR001650	-
	Lele16g0194	650	SMART	helicmild6	483	565	IPR001650	-
	Lele16g0194	650	TIGRFAM	recQ_fam: ATP-dependent DNA helicase, RecQ family	399	647	IPR004589	GO:0004386\|GO:0006310
	Lele16g0194	650	Gene3D	-	262	395	IPR027417	-
	Lele16g0194	650	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	439	647	IPR027417	-
	Lele16g0194	650	FunFam	ATP-dependent DNA helicase	441	648	-	-
	Lele16g0194	650	Pfam	DEAD/DEAH box helicase	306	364	IPR011545	GO:0003676\|GO:0005524
	Lele16g0194	650	Gene3D	-	396	440	IPR027417	-
	Lele16g0194	650	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	312	433	IPR014001	-
	Lele16g0194	650	PANTHER	DNA HELICASE RECQ FAMILY MEMBER	399	647	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g0194	Lele-ChrLele16	1111533	1117152	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele16g0194	389	583	Eukaryotic Initiation Factors Gene Family	AT5G11170	26.000	5.88e-10	59.7

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele13g2230	13	28569315	28573726	Lele16g0194	16	1111533	1117152	hybridization
	Lele14g2163	14	26951668	26952321	Lele16g0194	16	1111533	1117152	hybridization