Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0188 ATGGCAGACACACACGTGGCCGCGCCAATTCGTGAAATATGGCGGCTGGCTACTGTTGTAACACCGCCTCTCGTCATCCCATTTTCGTTCCAGCCTTCCCTGACTCCAGTTCTTATTTCCTCCATTGCCATTTTCCACCTTCCTCATCGATTGCTTGCTCTGTTTCTGGCTTCTCCTCGGGATCTGTTTGATTTGAATTCTTGCCGAAGTAGGTCGATGGTAATGATGGATCTAAAGGCGAAGGAATCTTCGTCGGATGAATCGGGTGACATCAATAAGTGCTGCACTGATTGCAAAACCACTAAAACCCCACTCTGGAGAGGAGGGCCAGCTGGGCCCAAGACGCTATGCAACGCTTGTGGGATTAGATACAGGAAGAGAAGGGTATGGGGGGTAAAAAATCAAGGCAAAGGTAAGCTTAATGCGTTTCTTTGTCTTCTGGACTCGCCCCACCCTCAGAAAAGGAATGCTGGTCTACAATTGTTTGAAGTTACACAAGGCAAATTGATGTTGTAG 516 0.4806 MADTHVAAPIREIWRLATVVTPPLVIPFSFQPSLTPVLISSIAIFHLPHRLLALFLASPRDLFDLNSCRSRSMVMMDLKAKESSSDESGDINKCCTDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRVWGVKNQGKGKLNAFLCLLDSPHPQKRNAGLQLFEVTQGKLML 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0188 171 ProSitePatterns GATA-type zinc finger domain. 95 120 IPR000679 GO:0006355|GO:0043565
Lele16g0188 171 SMART GATA_3 89 141 IPR000679 GO:0006355|GO:0043565
Lele16g0188 171 PANTHER OS01G0976800 PROTEIN 80 139 - -
Lele16g0188 171 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 88 131 - -
Lele16g0188 171 ProSiteProfiles GATA-type zinc finger domain profile. 95 125 IPR000679 GO:0006355|GO:0043565
Lele16g0188 171 CDD ZnF_GATA 95 129 IPR000679 GO:0006355|GO:0043565
Lele16g0188 171 Gene3D - 91 156 IPR013088 GO:0006355|GO:0008270
Lele16g0188 171 Pfam GATA zinc finger 95 128 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0188 Lele-ChrLele16 1072248 1076759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0188 59 128 C2C2-Gata Transcription Factor Family AT5G26930 54.286 2.92e-19 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele16g0188 GATA 2.5e-17 CL0167