Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0186 ATGGCGACAAGGAACCGCACTTTTCTCTATAGGAAGTACAGAGATGCATTGAAGGGTGTTCGGGTTCCGTCGAGTTCTACGGCCTCGACGAGTTCCGGCAGTGCTGGTGGCCCGGTCATTGAATTGGTCAGCACGTCGCTTCTGAATCAGAATCGTTCTTATGCTCCGCTTAGTACCGAGGATCCTGGTAATTCAAGTAAGGGTCCACTTACTGTAGGACTACCTCCAGCTTGGGTGGATGTATCTGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGGCCAAAGCTCATGCAAAGGCTTTAATGCCGTCGTTTGGAGATGGTAAGGAGGAACAACGAGCCATTGAAACTCTAACTCATGAGATAACTGACTTGATAAAGAGATCAGAGAGGCGACTGCAGAGACTTTCTGCCACCGGGCCTTCTGAGGATTCCAATGTGAGGAAGAACGTGCAGCGTTCTCTTGCTACTGACCTTCAGAACCTCTCTGTAGAGCTCCGCAAGAAACAATCAAATTATTTGAAGCGACTTAGACAGCAAAAAGAGGGTCAAGATGGTGTGGATCTAGAGATGAACATAAATGGAAGTAAATCCAGATTTGAAGATGATGCTTTGGATAATATGGTATTTAACGAGCATCAGATGGCCAAGCTGAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAACAGGCAAGCAAAAGTTCCTTATTTGCTGTTGTGGAATCAGTAAACGAGCTTGCTCAAATTATGAAAGATTTGTCTGTACTAGTAATAGACCAGGGAACCATTGTTGATCGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCCGAGAGAACACAAAAAAAGGGGGGTATGGTGATGTGTGCGACGGTGCTTATTATCATGTGCTTCATTATGCTGGTTCTCTTAATCCTTAAGGAAATATTGTTGTGA 999 0.4424 MATRNRTFLYRKYRDALKGVRVPSSSTASTSSGSAGGPVIELVSTSLLNQNRSYAPLSTEDPGNSSKGPLTVGLPPAWVDVSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEEQRAIETLTHEITDLIKRSERRLQRLSATGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSNYLKRLRQQKEGQDGVDLEMNINGSKSRFEDDALDNMVFNEHQMAKLKKSEAFTVEREKEIQQASKSSLFAVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLIIMCFIMLVLLILKEILL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0186 332 CDD SNARE_syntaxin16 233 297 - -
Lele16g0186 332 SMART tSNARE_6 231 298 IPR000727 -
Lele16g0186 332 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 236 298 IPR000727 -
Lele16g0186 332 PANTHER SYNTAXIN 81 318 IPR045242 -
Lele16g0186 332 Coils Coil 82 102 - -
Lele16g0186 332 Gene3D - 75 290 - -
Lele16g0186 332 SUPERFAMILY t-snare proteins 74 291 IPR010989 GO:0016020|GO:0016192
Lele16g0186 332 SMART SynN_4 69 184 IPR006011 GO:0016020
Lele16g0186 332 Pfam SNARE domain 272 324 IPR000727 -
Lele16g0186 332 FunFam Syntaxin-43 75 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0186 Lele-ChrLele16 1066205 1069278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0186 1 332 SNARE and Associated Proteins AT5G26980 75.676 0.0 503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2239 13 28622568 28625808 Lele16g0186 16 1066205 1069278 hybridization
Lele14g2172 14 26987589 26990643 Lele16g0186 16 1066205 1069278 hybridization