Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele16g0179 | ATGTCTAGAGCATTTGGCGACCACTGTGTGAAGGAGCATGGTCTTATTTCTGTGCCCGAGGTCACACACAGGAATCTGACCCCTAGAGATCAATTCGTGGTGCTAGCAACCGATGGGGTGTGGGATGTAATATCCAAAGAAGCAGCAGTAGATATCGTGAATTCAACGGCAGACAGAGCCAAGTCAGCCAAACGTTTGGTGGAGTGTGCGGTGCATGCATGGAAACGCAAGAGGCGAGGCGTTGCCATCGATGATATTTCAGCTATCTGTCTCTTTTTTTCACTCCTCCCCTTCATCTCTCTAAATACTAAATACATTAGCGTGGAACGGTAA | 333 | 0.4775 | MSRAFGDHCVKEHGLISVPEVTHRNLTPRDQFVVLATDGVWDVISKEAAVDIVNSTADRAKSAKRLVECAVHAWKRKRRGVAIDDISAICLFFSLLPFISLNTKYISVER | 110 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele16g0179 | 110 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 93 | IPR001932 | - | |
| Lele16g0179 | 110 | PANTHER | PROTEIN PHOSPHATASE | 1 | 91 | - | - | |
| Lele16g0179 | 110 | SUPERFAMILY | PP2C-like | 1 | 93 | IPR036457 | - | |
| Lele16g0179 | 110 | CDD | PP2Cc | 1 | 93 | IPR001932 | - | |
| Lele16g0179 | 110 | Gene3D | - | 1 | 95 | IPR036457 | - | |
| Lele16g0179 | 110 | Pfam | Protein phosphatase 2C | 1 | 67 | IPR001932 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele16g0179 | Lele-ChrLele16 | 1038342 | 1038764 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele16g0179 | 1 | 93 | PP2C-type Phosphatase Gene Family | AT3G05640 | 72.043 | 1.37e-46 | 151 |