Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0174 ATGGATGACGGGGGGCGATCAAGAGCTGCTCAGATATCGGCCGCGAGGGTGCAAGCGGATGCTGTTGTGGCGTTGGATGGGAGCGGCCATTACCGTTCCATTTCGGAAGCTGTCGACGCAGCGCCAAGCCAAAGCAACAGGAGTTACGTTATTTACGTGAAAAAGGGGCTTTATAAAGAGAACGTGGATATGAAAAGGAAGAAGACCAACATCATGTTGGTCGGAGAAGGCGTTGGCAAGACCATCGTCACTGGCAACCGCAATTTCATGCAAGGATCTATGGACTACTTTTCGAACCGCCACTGGGACTCCCAAGTTGATGGATCAGTTGTAGGGATAAGATTTAGGTTTGCAATAAAACAGCGTCCTCCAATAGAAAACCCAATCGTCAACCGTTGTTGGGAAGCAAGCGTCTCTGCCTTGAACAGACCGCTGGCAGAACTGACAATGACGACAAACCTTGTTTCCAACGGGGCCAAGTTTTTTAGCATATCTCTTTCAATATTAAATTGTGGATGGGTGGCAAAGAGAAAGGCAATAGCCATGGGAACGACGGTGTATGAACTTCTCCGTCTGCAATCTCCTCCTAACAAAGGTTGTGGAAGGTGGCCGGAGGAGCTGCTTAATATACCCAAGATGTCCGCGGATGGACAGAACAAAAGGAGAATAGCCATCATTGGCGTCTCTGCGGTGCTACTGGTGGGCATGGTGGTGGCCGTGACGGTCGGCATGACGTGGAAGGCATCAGATTCCGATGAGGACGACAATTCCGGTAAGACCGTGTCTAACAAAGTGAAAGCAGTGCAGAGCCTGTGCGCCCCCACGGACTACAAGGACGAATGCGAGGAGAGCCTGTCGGAGGACCCCACCAACACCACCGATCCCAAAGAACTCATCATGATGGCCTTCAACGTCACCATCAAGAAAATCGAGAAGGGTCTTCGTGAATCCGACACCTTGCACGAGGCCGAGAAGGATCCCCGAGCAAAGGAAGCCCTCCAAATCTGCAAGGACCTCATGGAACTTTCCATTGGCGAGTTCAGGAAATCCCTCGGCACCTTCGAGACCTTCGATTTCTACAACCTCGACAAGATTCTCATGAACCTCAAAGTTTGGCTCAGCGGAGCCATCACTTACCAGGAAACCTGCATTGAAGGCTTCGAGGAAGCCAAGAGCGACGCCGGTCAGAAGATGAAGCAGGCGCTCACGGCCGCCATGCACATGAGCAGCAACGGCCTCGCCATAGTCAACGACATGGCCGAAGCTTTATCCAGTCTGCACATCACAAAACAAGGAAGGCGTCTGCTCAATGATCAGGAGGATGGCAGCGAAGATCATCATGAGGAGGCAGGTCCGAACGAAGAAGGCGCGAGACCCGACGGCGACTTCGAGTTCCCCTCGTGGATCGATGAAAATCCTGCCGCTCGGAGACTGCTGACGAGCGAGCATAAAAGCAAACTGAAGCCCGATGTGGTGGTGGCGAAAGACGGGAGTGGGAAATACAAGAAAATCAAAGACGCGCTAAAGCATGTGCCGAAGAACAACAAAAAGCCGTTTGTGATCTACATCAAGGAAGGGGATTACAAAGAGTATGTGGAGGTGGATAAGCACATGACGTACGTTGTATTCGTGGGGGATGGCGGCAACAAGACCCGCATCACCGGCAACAAGAACTTCGCCGACGGAATAGGCACCTATAAGACCTGCACGGTGGCTGTAGCAGGGGACCACTTCATCGCCATCAACATGGGGTTCGAAAACTCGGCCGGTCCTGACGGACATCAGGCCGTGGCATTGAGGGTTCAATCCGACTTCTCCATATTCTACAGATGCCAATTGGATGGGTACCAGGACACGCTGTACGCGCACACCATGCGTCAATTCTACAGGGACTGCGTGATCACCGGCACCATAGACTTCATCTTCGGGGACGGCGCCGTAGTGATGCAGAACTGCACGTTCGTGGTGAGGAAGCCGAACGAGAACCAGCAGTGCATAGTGACGGCGCAAGGGAGGAAGGAGAGGCACCAACCGTCGGCGCTAGTGATCCAAGGAGGGTCCATAGTGTCCGACCCAAAGTTCTATAAAGTGAGGTTCGAGAACAAGGCGTACCTAGCGCGGCCATGGAAGAACTTCTCAAGGTTGATCATAATGGAGACCTTCATAGATGACCTGATACAGCCAGAAGGGTTTCTCAAGTGGGACGCTAACTCCACATCGTACAAGACATGCTGGTACGGCGAGTTCAACAACACAGGGCCAGGGGCCGACATGAGTCATCGCGTCAAGTGGAATGGGATCAAGAATCTGACGGCACAACATTCTCTGGATTTCACGCCCTTGAGGTACTTCAAGACGGATTACTGGATTAGGGAAACTAGGATTCCTTACAATCCCGGCCCCATGTACTACCCTCCAGTTACTGCTAAAAATGTCTCCTCTCAGTGA 2448 0.5229 MDDGGRSRAAQISAARVQADAVVALDGSGHYRSISEAVDAAPSQSNRSYVIYVKKGLYKENVDMKRKKTNIMLVGEGVGKTIVTGNRNFMQGSMDYFSNRHWDSQVDGSVVGIRFRFAIKQRPPIENPIVNRCWEASVSALNRPLAELTMTTNLVSNGAKFFSISLSILNCGWVAKRKAIAMGTTVYELLRLQSPPNKGCGRWPEELLNIPKMSADGQNKRRIAIIGVSAVLLVGMVVAVTVGMTWKASDSDEDDNSGKTVSNKVKAVQSLCAPTDYKDECEESLSEDPTNTTDPKELIMMAFNVTIKKIEKGLRESDTLHEAEKDPRAKEALQICKDLMELSIGEFRKSLGTFETFDFYNLDKILMNLKVWLSGAITYQETCIEGFEEAKSDAGQKMKQALTAAMHMSSNGLAIVNDMAEALSSLHITKQGRRLLNDQEDGSEDHHEEAGPNEEGARPDGDFEFPSWIDENPAARRLLTSEHKSKLKPDVVVAKDGSGKYKKIKDALKHVPKNNKKPFVIYIKEGDYKEYVEVDKHMTYVVFVGDGGNKTRITGNKNFADGIGTYKTCTVAVAGDHFIAINMGFENSAGPDGHQAVALRVQSDFSIFYRCQLDGYQDTLYAHTMRQFYRDCVITGTIDFIFGDGAVVMQNCTFVVRKPNENQQCIVTAQGRKERHQPSALVIQGGSIVSDPKFYKVRFENKAYLARPWKNFSRLIIMETFIDDLIQPEGFLKWDANSTSYKTCWYGEFNNTGPGADMSHRVKWNGIKNLTAQHSLDFTPLRYFKTDYWIRETRIPYNPGPMYYPPVTAKNVSSQ 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0174 815 Pfam Pectinesterase 20 96 IPR000070 GO:0030599|GO:0042545
Lele16g0174 815 Pfam Pectinesterase 490 785 IPR000070 GO:0030599|GO:0042545
Lele16g0174 815 PANTHER PECTINESTERASE 15 97 - -
Lele16g0174 815 MobiDBLite consensus disorder prediction 439 466 - -
Lele16g0174 815 Gene3D Invertase/pectin methylesterase inhibitor family protein 263 420 IPR035513 -
Lele16g0174 815 MobiDBLite consensus disorder prediction 439 465 - -
Lele16g0174 815 Gene3D - 484 800 IPR012334 -
Lele16g0174 815 Gene3D - 14 182 IPR012334 -
Lele16g0174 815 CDD PMEI-like_3 270 420 - -
Lele16g0174 815 SUPERFAMILY Pectin lyase-like 16 95 IPR011050 -
Lele16g0174 815 SUPERFAMILY Pectin lyase-like 488 798 IPR011050 -
Lele16g0174 815 FunFam Pectinesterase 484 801 - -
Lele16g0174 815 ProSitePatterns Pectinesterase signature 2. 634 643 IPR033131 -
Lele16g0174 815 TIGRFAM PME_inhib: pectinesterase inhibitor domain 260 418 IPR006501 GO:0004857
Lele16g0174 815 FunFam Pectinesterase 264 420 - -
Lele16g0174 815 SMART PMEI_2 263 415 IPR006501 GO:0004857
Lele16g0174 815 Pfam Plant invertase/pectin methylesterase inhibitor 267 415 IPR006501 GO:0004857
Lele16g0174 815 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 267 419 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0174 Lele-ChrLele16 1026422 1030572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0174 1 96 Carbohydrate Esterase AT3G05610 39.796 1.09e-15 79.3