Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0173 ATGCTTCAAAGGCGGGTAGGGGTAGCAAATGGCGCGTTAGAGAAAGAGGCGCGTGCTAGCTGGAGATCATCCACGTGGAAAGAGGTGGTTGGTGGAGATTCGCTGGGGAGGTCGGAGGTCGTCAGCTCAGCAACAATGGGGATCGATCTCAAAGCTGGCGGGAAGAGCAAGAAGACCAAAAGAACGGCACCCAAGTCCAACGATATCTATCTCAAGCTCCTTGTCAAGCTTTATCGCTTTCTAGTACGGAGAACTGAAAGCAGTTTCAATGCTGTAATACTCAAGCGTCTTTTCATGAGCAAAGTCAACAAGGCTCCACTTTCTCTGTCAAGATTGATAAAGTTCATGAAGGGGAAGGAAGATAAGACTGCAGTGTTGGTGGGGACTGTGACTGATGATATTCGAGTTTATGAAGTTCCTCCTTTGAAAGTTGCAGCACTCCGGTTTACAGAGACGGCACGTGCAAGGATAGAGAAGGCTGGCGGTGAGTGCTTGACTTTTGATCAGCTGGCTCTCAGGGCTCCTCTGGGACAGAACACGGTCCTTCTTAGAGGCCCCAAGAATTCTCGTGAAGCTGTGAAGCATTTTGGTCCCGCACCTGGGGTGCCGCACAGCCACACCAAGCCTTATGTGCGATCAAAGGGAAGGAAGTTCGAGCGTGCTAGAGGAAGGAGGAACAGCAAAGGATTTAGGGTTTAA 699 0.5021 MLQRRVGVANGALEKEARASWRSSTWKEVVGGDSLGRSEVVSSATMGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTESSFNAVILKRLFMSKVNKAPLSLSRLIKFMKGKEDKTAVLVGTVTDDIRVYEVPPLKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSKGFRV 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0173 232 SUPERFAMILY Ribosomal proteins L15p and L18e 65 184 IPR036227 -
Lele16g0173 232 MobiDBLite consensus disorder prediction 209 232 - -
Lele16g0173 232 MobiDBLite consensus disorder prediction 196 232 - -
Lele16g0173 232 FunFam 60S ribosomal protein L18 46 232 - -
Lele16g0173 232 PANTHER 60S RIBOSOMAL PROTEIN L18 46 232 IPR000039 GO:0003735|GO:0005840|GO:0006412
Lele16g0173 232 Pfam Ribosomal protein 60S L18 and 50S L18e 47 232 IPR021131 -
Lele16g0173 232 Gene3D - 46 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0173 Lele-ChrLele16 1022836 1025853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0173 48 232 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 78.495 4.36e-104 297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0173 16 1022836 1025853 Lele05g0205 05 1102208 1111879 CCT
Lele16g0173 16 1022836 1025853 Lele06g0012 06 72926 82490 CCT
Lele16g0173 16 1022836 1025853 Lele07g0207 07 1113353 1122884 CCT
Lele16g0173 16 1022836 1025853 Lele08g0013 08 68697 78267 CCT
Lele16g0173 16 1022836 1025853 Lele16g0173 16 1022836 1025853 ECH
Lele13g2248 13 28668746 28670362 Lele16g0173 16 1022836 1025853 hybridization
Lele14g2182 14 27025097 27027502 Lele16g0173 16 1022836 1025853 hybridization