Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0172 ATGATGATGATGACCATGGAGGGAATGATGGACAAGGCCGTCCTCGACGACGTTATTCGGAGGCTGCTCGAAGGTAAAGGCGGGAAACAGGTCCAGCTTTCTGAGTCGGAGATCCGTCAACTCTGCGTCAACGCCCGCCAAATCTTCCTCTCCCAGCCTAATCTCCTCGAGCTCCATGCTCCTATCCACATCTGCGGTGATATACATGGACAGTACCAAGACTTACTGAGGCTATTTGAATATGGCGGCTACCCTCCCGCTGCAAACTACTTGTTTCTGGGGGACTACGTTGACAGAGGGAAGCAAAGCTTGGAGACTATATGTTTGCTTTTGGCCTACAAAATAAGATATCCCGACAAAATTCATCTCCTGAGAGGAAACCATGAAGAAGCTAAGATAAACCGGATATATGGGTTCTACGATGAATGTAAAAGGAGGTTCAATGTAAGGTTGTGGAAGATATTTTCTGACTGCTTTAACTGTTTGCCCGTGGCTGCACTCATTGCTGGCAAAATACTTTGCATGCACGGCGGTCTCTCTCCAGAATTGCAAACTTTGGATCAGATAAAGGAGATTACAAGACCTACCGAAGTTCCTGATGGTGGTCTCCTCTGTGATCTGCTTTGGTCCGATCCGGATCCCACTATTGAGGGCTGGGCAGAAAGCGACCGGGGGGTGTCTTGTACTTTTGGGCCTGATGCAGTCAGAGACTTTTTGGATAAGAATGATCTTGACCTCATTTGCAGAGGTCATCAGGTGGTGGAGGATGGATACGAGTTTTTCGCTAAACAAAGTCTAGTCACCATATTTTCTGCTCCAAACTACGGTGGGGAGTTTGATAATGCTGGTGCGATTTTGAGCGTTGATGAGTCTCTAGTATGTTCCTTCAAGATACTGAAACCCATCATGTATAAAGCATCCGGAAGTGGTTCAAAAATGAATCTTAAGAAGCCCCCGAAAAAGGTATAG 969 0.4665 MMMMTMEGMMDKAVLDDVIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPNLLELHAPIHICGDIHGQYQDLLRLFEYGGYPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIHLLRGNHEEAKINRIYGFYDECKRRFNVRLWKIFSDCFNCLPVAALIAGKILCMHGGLSPELQTLDQIKEITRPTEVPDGGLLCDLLWSDPDPTIEGWAESDRGVSCTFGPDAVRDFLDKNDLDLICRGHQVVEDGYEFFAKQSLVTIFSAPNYGGEFDNAGAILSVDESLVCSFKILKPIMYKASGSGSKMNLKKPPKKV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0172 322 CDD MPP_PP1_PPKL 14 301 - -
Lele16g0172 322 Pfam Serine-threonine protein phosphatase N-terminal domain 15 58 IPR031675 -
Lele16g0172 322 SUPERFAMILY Metallo-dependent phosphatases 11 303 IPR029052 -
Lele16g0172 322 SMART pp2a_7 33 303 IPR006186 GO:0016787
Lele16g0172 322 Pfam Calcineurin-like phosphoesterase 61 253 IPR004843 GO:0016787
Lele16g0172 322 FunFam Serine/threonine-protein phosphatase 6 310 - -
Lele16g0172 322 ProSitePatterns Serine/threonine specific protein phosphatases signature. 124 129 IPR006186 GO:0016787
Lele16g0172 322 Gene3D - 7 309 IPR029052 -
Lele16g0172 322 PRINTS Serine/threonine phosphatase family signature 243 263 IPR006186 GO:0016787
Lele16g0172 322 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Lele16g0172 322 PRINTS Serine/threonine phosphatase family signature 265 281 IPR006186 GO:0016787
Lele16g0172 322 PRINTS Serine/threonine phosphatase family signature 61 88 IPR006186 GO:0016787
Lele16g0172 322 PRINTS Serine/threonine phosphatase family signature 90 117 IPR006186 GO:0016787
Lele16g0172 322 PRINTS Serine/threonine phosphatase family signature 157 183 IPR006186 GO:0016787
Lele16g0172 322 PRINTS Serine/threonine phosphatase family signature 123 147 IPR006186 GO:0016787
Lele16g0172 322 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 19 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0172 Lele-ChrLele16 1020598 1022544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0172 40 246 Calmodulin-binding Proteins AT5G63870 32.794 2.41e-33 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2249 13 28673797 28675812 Lele16g0172 16 1020598 1022544 hybridization
Lele14g2183 14 27028012 27029833 Lele16g0172 16 1020598 1022544 hybridization