Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0170 ATGTCGAGTGGGGTATCAGTAGAATTGGAGGGGAGCTCCATAATCATGTGCAGTCATTTTCAGTTGAGGGACCCATCTTCTTCAATAAGACAATCCAGCAGGTTCGATCTTCCACAAATTAAACTAGTTCAGGTGTGCGACAGGGATTCACAAAAATTAAGAATGCGTAGAACATCCCTTGGTGTCAAGATGCAGAATCTTCATATTCGCATTCGAAAAATGAGTAGACTGTCAAGTCGCACTATTTATGTTGGCAATCTTCCTGGCGATGTTCGTTTGAGAGAAGTTGAGGATCTTTTCTACAAGTATGGTCCTATCGTTGACATTGATTTGAAAATTCCTCCAAGACCACCCGGTTATGCTTTTGTTAAGTTTGAGGATCGTCGCGATGCTGAAGATGCTATTCGCTATCGAGACGGTTATAATTTTGATGGTTTCCGATTGCGAGTTGAATTTGCACATGGTGGGCGGGGATATTCATCTTCGGTTGACCGTTACAGTAGTCACAGCAGTGGTGGTGGTAGCCGTGGAGTTTCCAGGCGTTCGGGCTATCGTGTTCTGGTCACTGGATTACCCCCTTCAGCTTCATGGCAAGACTTGAAGGATCACATGCGTAAAGCTGGCGATGTATGTTTCTCTGAAGTCTTTCGGGAGCGTGGTGGCATGACTGGGATCGTGGATTATACCAATTATGATGATATGAAGTATGCTATCAGGAAACTTGACGACTCAGAATTCCGGAATGCATTTTCTCGTGCATACATACGGGTGAGGGAATATGATCGTCGGAGTTATTCTAGGAGTCTCAGCCGCGATTCAAGGAGGAGCTATTCTAGAAGCTATAGCCGCAGTCCTTATAGGTCAAGAAGTCAAAGCCACAGTTGGAGTCGGGATCACAGTTATAGTGGCAGGAGCAGAAGTTTGTCACCAAAGGTAAAACGCTCAAGACGTTCAATATCTCTTTCAAGATCCCGTTCAAGATCCAGATCTCCAAATTCATCTCCTTCACCTTATAGAAGTTACAGTCCTCGCCGTAGAAACTGGTCACGATCCCCTTCACCTTCGGTGAGGTCTGACCACAGCAGGTCTGTTGACTCTGGATATAGCTATTGA 1113 0.4519 MSSGVSVELEGSSIIMCSHFQLRDPSSSIRQSSRFDLPQIKLVQVCDRDSQKLRMRRTSLGVKMQNLHIRIRKMSRLSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVKFEDRRDAEDAIRYRDGYNFDGFRLRVEFAHGGRGYSSSVDRYSSHSSGGGSRGVSRRSGYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSLSRDSRRSYSRSYSRSPYRSRSQSHSWSRDHSYSGRSRSLSPKVKRSRRSISLSRSRSRSRSPNSSPSPYRSYSPRRRNWSRSPSPSVRSDHSRSVDSGYSY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0170 370 MobiDBLite consensus disorder prediction 265 370 - -
Lele16g0170 370 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 74 183 - -
Lele16g0170 370 MobiDBLite consensus disorder prediction 279 308 - -
Lele16g0170 370 Gene3D - 185 261 IPR012677 -
Lele16g0170 370 CDD RRM1_SF2_plant_like 81 151 - -
Lele16g0170 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 155 IPR000504 GO:0003723
Lele16g0170 370 MobiDBLite consensus disorder prediction 324 370 - -
Lele16g0170 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 248 IPR000504 GO:0003723
Lele16g0170 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 149 IPR000504 GO:0003723
Lele16g0170 370 Gene3D - 65 184 IPR012677 -
Lele16g0170 370 CDD RRM2_SF2_plant_like 184 259 - -
Lele16g0170 370 FunFam serine/arginine-rich splicing factor SR34A-like 184 261 - -
Lele16g0170 370 SUPERFAMILY RNA-binding domain, RBD 79 251 IPR035979 GO:0003676
Lele16g0170 370 SMART rrm1_1 81 151 IPR000504 GO:0003723
Lele16g0170 370 SMART rrm1_1 185 254 IPR000504 GO:0003723
Lele16g0170 370 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 66 343 - -
Lele16g0170 370 MobiDBLite consensus disorder prediction 309 323 - -
Lele16g0170 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 262 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0170 Lele-ChrLele16 1011486 1016525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0170 76 153 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 5.97e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2251 13 28681214 28686323 Lele16g0170 16 1011486 1016525 hybridization
Lele14g2185 14 27033704 27038787 Lele16g0170 16 1011486 1016525 hybridization