Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0163 ATGGAGTTCGCATTGAGCGACAACGCTCTGAAAATCTTTGCTCGCTGCGTCACTTGTCTCGCCCGCATCGGAAATGAGCTGTCTATTCAAGCCTCTTCCTCTCAGCTTGTTTTCCACGCTCTCAATTCATCGCGATCAGCATATCAATCCATTACCTTCAAACCAGGATTCTTTGATGTCTATACAGTATCCGGAAACCTGGCGCAATTTAGTGTACTTTTGAAGGCTATTTGTTCAGTTTTCAGGACACCTATAACAAATATTGATCGTTTGACCGTGAGACTGCCTGGTCCTGACGCTTCTAAAGTGCAGTGGACGTTGGAATGCTGCAGTGGTATGAGGAAAACCTATTGGATTACTTGCAATACCGAATCTGACATACAGCACTTATCCCTTGATACGCAAAAACTCCCAAGTAACTTTGTTGTGAGGCCTCAAATTCTCAACAGGTTACTAGCTAATTTTCAGTCATCTCTCCAAGAGATTACCATCATCGCAACAGAACCTCCCTCATTACCTTCTGATGCGGCAAGTGAAATTGGTGGAAAGGCTGTTGAACTTCGAAGTTATTTGGACCCAACCAAAGATAATGACTCATTGCTGCACACCCAGTTGTGGATTGATCCTAAAGAGGAATTTTTACAGTATATTCACAATGGAGACCCTGTTGATGTGACTTTCAGTGTAAAAGAACTGAAGGCATTTCTTTCATTCTGTGAAGGCTGTGAAGTTGACATCCATTTACATTTTGAGAAAGCTGGAGAGCCTGTTCTAATGGCACCTAAATTTGGTTTGGAAGATGAGCCTGATTCAAATTTTGATGTCACACTTGTATTGGCAACCATGTTGATATCTCAGCTACATGAAGGTGCCTCAGAAGTTCCACAGGCATCTACAAGAATCCATGCTCAAACTGAAAAGGGTGGATCTCACGTGCAGCAAGAGAATTGCAAAACAAATGCATCTGAGCTTCCATCTGATCACACCCGTATATGGTCTGACCTATCAGGAAGTGCAACTAAAAATACCAGTGGCATAGAAGAAAGACAGGCGCAAAGAGAAATTTTTTTGAATGATAATGAACAGAGGGAAATCCAAAGGATTGTTAAAATGCAAATTTCAGGAGTAGCATCGGTTGCAAGAAATACTTTTGTTGAGAACAATTCCTGCCATCCAACTGAGGAAGATCGTATTCAAGAACCTCAAGATGGGATACAAAGTAATGATCAAGGCTTTTCTCAGCATCACCCCAGCAACTGGGTAGAATCTGAAGAGGATGATGATGATGGGGATGAGAACGAGCAGTATGTTCGGTCAACACCACCATACTATGAGGAATCATAA 1344 0.4211 MEFALSDNALKIFARCVTCLARIGNELSIQASSSQLVFHALNSSRSAYQSITFKPGFFDVYTVSGNLAQFSVLLKAICSVFRTPITNIDRLTVRLPGPDASKVQWTLECCSGMRKTYWITCNTESDIQHLSLDTQKLPSNFVVRPQILNRLLANFQSSLQEITIIATEPPSLPSDAASEIGGKAVELRSYLDPTKDNDSLLHTQLWIDPKEEFLQYIHNGDPVDVTFSVKELKAFLSFCEGCEVDIHLHFEKAGEPVLMAPKFGLEDEPDSNFDVTLVLATMLISQLHEGASEVPQASTRIHAQTEKGGSHVQQENCKTNASELPSDHTRIWSDLSGSATKNTSGIEERQAQREIFLNDNEQREIQRIVKMQISGVASVARNTFVENNSCHPTEEDRIQEPQDGIQSNDQGFSQHHPSNWVESEEDDDDGDENEQYVRSTPPYYEES 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0163 447 FunFam cell cycle checkpoint control protein RAD9A 2 282 - -
Lele16g0163 447 Pfam Rad9 13 282 IPR007268 GO:0000077|GO:0030896
Lele16g0163 447 MobiDBLite consensus disorder prediction 328 348 - -
Lele16g0163 447 MobiDBLite consensus disorder prediction 403 418 - -
Lele16g0163 447 SUPERFAMILY DNA clamp 10 119 - -
Lele16g0163 447 MobiDBLite consensus disorder prediction 389 447 - -
Lele16g0163 447 MobiDBLite consensus disorder prediction 328 346 - -
Lele16g0163 447 PIRSF RAD9 1 445 IPR026584 GO:0000077|GO:0006281|GO:0030896
Lele16g0163 447 PANTHER DNA REPAIR PROTEIN RAD9 1 433 IPR007268 GO:0000077|GO:0030896
Lele16g0163 447 Gene3D - 2 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0163 Lele-ChrLele16 968398 972103 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0163 16 968398 972103 Lele13g2266 13 28776579 28779048 CCT
Lele16g0163 16 968398 972103 Lele14g2202 14 27120825 27123350 CCT
Lele16g0163 16 968398 972103 Lele15g0146 15 894153 896957 CCT
Lele16g0163 16 968398 972103 Lele16g0151 16 915661 918188 CCT
Lele13g2256 13 28719895 28727446 Lele16g0163 16 968398 972103 hybridization
Lele14g2192 14 27072057 27077291 Lele16g0163 16 968398 972103 hybridization