Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0153 ATGGATCATGCACGATCGACCTCGGGGAATGCCGAGGATAACATGGGGATTCCAGATGACTTGCGATGCAAGAGGTCGGATGGGAAACAGTGGAGATGCACTGCCATGTCCATGCCAGATAAAACTGTTTGTGAGAAGCACTATATCCAGGCAAAGAAGAGGGCAGCTAATTCTGCCATGAGAGCTAGTCTGAAGAAGGCTAAGAGAAAGTCTTTAGGGGAGAGTGACATTTATCTAGAGAGCAAGAGTGAGGATTTTGACATGCCACTCGCAAGCATGAAAGTTGAACAGCATTCGGCCTCTGGAAAGAACAAGGCGTCAAAAAATCAGTTCAGATATACAGCAGAAACACCAACCACAAGGACCACCTCTGCGCGCAATGTTCCAAAGCCAAATGACGAGTCACCAGATGATATTCCCCAGTATGAAGAAAATTGGATGTCTTACGAGTCACCACCTACTTCTCGAATGGACTTGTCCAGGAAAAGATCTCAAACAAATTTAGATGTCAATGCTGCTACAGTCGTATGCCAGGAATACTCGGATGGAACTACAGATTCCTCTGATGACACTGGTGGGCATACTTGCCATCAATGTCGAAGGAATGACAGAGACAGAGTTTTTTGGTGTTCAAGATGTGATAGGAGAGGATACTGTGAGAGCTGTATATTAACATGGTACTCAGACATGTCATTGGATGAAATTCAGAGAACGTGTCCTGCCTGCCGTGGCACCTGTAATTGCAAAGTTTGCTTACGTGGTGATAATTCAATAAAGGTACGGATTCGAGAGATACCTGTTCTAGACAAGTTACAGTATCTCCACGTGCTGTTGTCATCAGTACTTCCTGTGGTTAAGCAGATCCATCATGAGCAGTGTTATGAAGTTGAACTTGAAAAGAAGTTGCGTGGGATTGAAATAGATCTTCCCAGGACAAAACTGAATGCAGATGAGCAAATGTGCTGTAATTTCTGTCGGATACCCATTACTGATTATCACCGGCACTGCCCAAATTGTACATATGACTTATGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAAATGTAAATCCAGAAAAAGTAACCCCAACAGATGAAGCAAAACTTTCAAATCAAAATTTGCTATATAAGTTACCTGATTGGAGGTCAAACAGTGATGGTAGCATTCCATGCCCCCCAAAGAAATATGGTGGCTGTGGTTATTCACCATTGAATTTAAGCCGCATCTTCAAGATGAATTGGGTTGCAAAATTGGTGAAAAATGTGGAGGAGATGGTTAGTGGCTGCCAGATTAGTGAAGTTGGAGGATCAGAAACCAAGTTGAATGATCTCAAACTTTGCCAATATTCTCACAGTGAGGCCAGCGATGATAATTATCTGTACTGTCCAGCATCTGAAGATCTCAAAACTGATGGTATAGGAAGTTTTAGAAGGCACTGGAAAAATGGTGAACCCATTATTGCCAAGCAAGTATTTGATAGGTCATCAAGCTGGGATCCAATGGCCATATGGAGAGGGGTTCGAGAGACAGCAGATGAGAAAATGAAAGAAGTTGAGAACAGAGTGGTTAAGGCCCTGGATTGTTTAACCTGGTCAGAGATAGATATCGAACTTAATGAATTCATGAAAGGATACTTTGAGGGGCGTACCCAGGAAAATGGTTGGCCACAATTATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTTTATTGCATCAAAGACCTGAATTCATCAGCAAACTGCCTTTACTTGAATATATTCACTCGAAATGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAAAATGATGTAGGACCCAAGATTTATATATCATATGGGGTCAATGAGGAACTTGGTAGTGGTGACTCTGTGACTAATCTCCACTTCAATATGCGTGACATGGTCTATCTTTTGGTCCATACGAGTGAAGTGAAGCTGAAGAACCTGCAGGGAACAAAAAGTGAAAAGATACAGAAATCATCTGATGCAAGTGAATTGCCTGTGGATCCACAAATATGTTCCGTGGGAAGTCCAGCTGATTCATCGCTTGGCACAGAAAGAAACGGACTGGATTTGGATTCAAATGAGAAAACGTCAATTATCAATGAAGGGTTTGAAAATTATTCTAGTGCTGAAGGGGATATGATCAATTCTGAACTTCCAGTCAGGGATGGAGATGGCGCGGAGAAAACAGGTCCTGGAGTTCTTTGGGATGTCTTTCGTAGGCAGGATGTTCCAAAGCTGACTGAATTTCTAAAAACACATTGGGAAGAATTTGCACAGCCAGATGATATGGAAAATAAATTTGTTACAAGGCCTCTTTATGATGGAGTTATTTTTCTTAACGGACACCATAAAAGGGAGTTGAAGGAAGAATTTGGAGTGGAGCCATGGTCATTTGAACAGTGTGTAGGGGAAGCTGTATTTGTTCCTGCAGGGTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAACTGGGCCTTGATTTCTTATCACCGGAAAGCCTGGGGGAGGCTGTGAGATTGGCGGAGGATGTCCGCTGTCTGCCAAATGAACATGAAGTCAAGCTTCAAGTATTGGAGGTTGGGAAGATATCTCTTTATGCAGCGAGTTCAGCCATCAAAGAAGTTCAGAAGCTCGTTCTTGACCCAAAACTTGGTGCGGAGATTGGATTTGGAGATCTCAATCTGACTTCAATGGTTGCTGAGAACTACGAGAAGATGGTTAAGCGAAGACAGATTTCTTGTGCTTGA 2784 0.4278 MDHARSTSGNAEDNMGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRASLKKAKRKSLGESDIYLESKSEDFDMPLASMKVEQHSASGKNKASKNQFRYTAETPTTRTTSARNVPKPNDESPDDIPQYEENWMSYESPPTSRMDLSRKRSQTNLDVNAATVVCQEYSDGTTDSSDDTGGHTCHQCRRNDRDRVFWCSRCDRRGYCESCILTWYSDMSLDEIQRTCPACRGTCNCKVCLRGDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHEQCYEVELEKKLRGIEIDLPRTKLNADEQMCCNFCRIPITDYHRHCPNCTYDLCLNCCRDLREANVNPEKVTPTDEAKLSNQNLLYKLPDWRSNSDGSIPCPPKKYGGCGYSPLNLSRIFKMNWVAKLVKNVEEMVSGCQISEVGGSETKLNDLKLCQYSHSEASDDNYLYCPASEDLKTDGIGSFRRHWKNGEPIIAKQVFDRSSSWDPMAIWRGVRETADEKMKEVENRVVKALDCLTWSEIDIELNEFMKGYFEGRTQENGWPQLLKLKDWPSPSASEEFLLHQRPEFISKLPLLEYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGVNEELGSGDSVTNLHFNMRDMVYLLVHTSEVKLKNLQGTKSEKIQKSSDASELPVDPQICSVGSPADSSLGTERNGLDLDSNEKTSIINEGFENYSSAEGDMINSELPVRDGDGAEKTGPGVLWDVFRRQDVPKLTEFLKTHWEEFAQPDDMENKFVTRPLYDGVIFLNGHHKRELKEEFGVEPWSFEQCVGEAVFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEDVRCLPNEHEVKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGFGDLNLTSMVAENYEKMVKRRQISCA 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0153 927 MobiDBLite consensus disorder prediction 98 130 - -
Lele16g0153 927 ProSiteProfiles Zinc finger RING-type profile. 196 243 IPR001841 -
Lele16g0153 927 MobiDBLite consensus disorder prediction 1 23 - -
Lele16g0153 927 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Lele16g0153 927 SMART cupin_9 574 857 IPR003347 -
Lele16g0153 927 Gene3D Cupin 455 866 - -
Lele16g0153 927 SUPERFAMILY Clavaminate synthase-like 477 864 - -
Lele16g0153 927 Pfam WRC 18 58 IPR014977 -
Lele16g0153 927 Pfam JmjC domain, hydroxylase 742 836 IPR003347 -
Lele16g0153 927 MobiDBLite consensus disorder prediction 98 141 - -
Lele16g0153 927 ProSiteProfiles JmjC domain profile. 567 857 IPR003347 -
Lele16g0153 927 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 189 256 IPR018866 -
Lele16g0153 927 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 19 891 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0153 Lele-ChrLele16 920462 926135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0153 18 58 GRF Transcription Factor Family AT3G13960 46.341 2.51e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele16g0153 JmjC 1e-06 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2264 13 28768734 28774376 Lele16g0153 16 920462 926135 hybridization
Lele14g2200 14 27112786 27118559 Lele16g0153 16 920462 926135 hybridization