Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0151 ATGTCAAACATCACGAGCTGTGACAGTGGGAGTTTCTCCACAGAGAATACCAGAGAAGATGAAGCTATTAAACGGCATCATCCTCAACTTACTGCTGCTCATCATCACCAGTTTCACAGTTCAAGTTCTCTTACCTCAACTACCACTAACAGCAACGGTTCCAACGCCAATTCCCAACTGCCTCCTCCTCCTCCTCCTCCCCCTGTTAAGAAGAAACGAAGCCTCCCAGGAAACCCAGATCCAAGTGCTGAAGTCATTGCTTTGTCACCAAACACCCTCATGGCGAGGAACCGATTCGTATGTGAAATCTGCAGCAAAGGATTCCAAAGGGATCAGAATCTGCAATTGCACCGCCGAGGCCATAACCTGCCCTGGAAGCTCAAGCAAAGGCCGACCACAGAAGTTCGAAAGCGCGTTTATGTTTGTCCAGAGCCGTCGTGCGTTCACCATAACCCAAGTCGAGCGCTGGGTGATCTTACTGGCATCAAGAAGCACTTCTCAAGAAAACACGGCGAGAAGAAATGGAAGTGTGAAAAGTGCTCCAAGAGATACGCAGTCCAGTCCGACTGGAAAGCCCATTCTAAGATCTGTGGAACTAGGGAATACAAATGTGACTGTGGCACCGTCTTCTCCAGACGAGATAGCTTTATCACCCACAGAGCTTTCTGCGACGCGTTGGCCGAGGAGAATAATAAAACCAACAATGAAGGACTACTAGGGCCAAAATTATTGGGTCCAAATTCAGACTCATCACAAGGTCAACATCAAATCCCAAATCCCGTTTCTTCATTGCCAATCAACTCCAACTTCGTCAACCCACAAAACGGGACGCTTCACTATAACCATTCTGGTGAAATCCACCATCCACTATCACACCTTCATCAGGAGCTCCTAGAATTTCCAGCAAAACCGTTCAACTACATGACTGGAAGCGTATTTGCAAGAAGCCTCTCGTCCAACAGTTCATGTTCATCACTTCAACTGGGTTCAAATAGTTCCCTGAGCATGTTGGAAGAAAACGAGCACCAACCAGGTGGATCGGCCCATATGTCAGCGACGGCATTGTTGCAGAAAGCAGCTCAAATGGGAGCAACTATGAGTAATAGTAGTAACAGCTCGTGCATGGCACCCTCATCAATGGGGCATAATAATAACCACTACTACATAAACAGTGGACAAGCTGATATGTCATCATCTCAGTATTTCAGCGGAAATAATAATAGCTTTGGGATGAACAGAGTGGATATGTTCAATGCTATAATGGACCAAAGCAAGGCGTTATCGAAGATGATAGAGCAGAACAGTCGAAGCAGTAATAATATGAATAACAATGGAGTTTTGCATGGTGCAATGAATAAAGCCAGTGGGGATGTAACGACTCTGGACTTGTTGGGGATTGGAGGAGGAGGTGGTGGTGGTGCACATGATGCTTTTCTATGGCGCCAAGCAGGTTGA 1455 0.4653 MSNITSCDSGSFSTENTREDEAIKRHHPQLTAAHHHQFHSSSSLTSTTTNSNGSNANSQLPPPPPPPPVKKKRSLPGNPDPSAEVIALSPNTLMARNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRPTTEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTVFSRRDSFITHRAFCDALAEENNKTNNEGLLGPKLLGPNSDSSQGQHQIPNPVSSLPINSNFVNPQNGTLHYNHSGEIHHPLSHLHQELLEFPAKPFNYMTGSVFARSLSSNSSCSSLQLGSNSSLSMLEENEHQPGGSAHMSATALLQKAAQMGATMSNSSNSSCMAPSSMGHNNNHYYINSGQADMSSSQYFSGNNNSFGMNRVDMFNAIMDQSKALSKMIEQNSRSSNNMNNNGVLHGAMNKASGDVTTLDLLGIGGGGGGGAHDAFLWRQAG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0151 484 Gene3D Classic Zinc Finger 99 141 - -
Lele16g0151 484 SUPERFAMILY beta-beta-alpha zinc fingers 98 195 IPR036236 -
Lele16g0151 484 FunFam protein indeterminate-domain 5, chloroplastic-like 153 232 - -
Lele16g0151 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 121 IPR013087 -
Lele16g0151 484 Gene3D Classic Zinc Finger 152 233 - -
Lele16g0151 484 MobiDBLite consensus disorder prediction 1 83 - -
Lele16g0151 484 FunFam protein indeterminate-domain 12-like 78 146 - -
Lele16g0151 484 Pfam Zinc finger, C2H2 type 99 121 IPR013087 -
Lele16g0151 484 MobiDBLite consensus disorder prediction 14 28 - -
Lele16g0151 484 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Lele16g0151 484 MobiDBLite consensus disorder prediction 34 57 - -
Lele16g0151 484 SMART c2h2final6 140 170 IPR013087 -
Lele16g0151 484 SMART c2h2final6 175 195 IPR013087 -
Lele16g0151 484 SMART c2h2final6 99 121 IPR013087 -
Lele16g0151 484 MobiDBLite consensus disorder prediction 58 74 - -
Lele16g0151 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 46 466 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0151 Lele-ChrLele16 915661 918188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0151 66 479 IDZ Gene Family AT1G03840 44.513 2.63e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele16g0151 zf-C2H2 0.0083 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1440 05 9207193 9210527 Lele16g0151 16 915661 918188 CCT
Lele13g2256 13 28719895 28727446 Lele16g0151 16 915661 918188 CCT
Lele14g2192 14 27072057 27077291 Lele16g0151 16 915661 918188 CCT
Lele15g0154 15 944941 951906 Lele16g0151 16 915661 918188 CCT
Lele16g0163 16 968398 972103 Lele16g0151 16 915661 918188 CCT
Lele16g0151 16 915661 918188 Lele13g2274 13 28841051 28842515 CCT
Lele16g0151 16 915661 918188 Lele14g2209 14 27185234 27186701 CCT
Lele16g0151 16 915661 918188 Lele15g0137 15 821579 823031 CCT
Lele16g0151 16 915661 918188 Lele16g0144 16 841010 859880 CCT
Lele16g0151 16 915661 918188 Lele05g1435 05 9127958 9131008 CCT
Lele16g0151 16 915661 918188 Lele06g1296 06 8263028 8266228 CCT
Lele16g0151 16 915661 918188 Lele07g1499 07 9148420 9151697 CCT
Lele16g0151 16 915661 918188 Lele08g1293 08 8227113 8230326 CCT
Lele15g0146 15 894153 896957 Lele16g0151 16 915661 918188 ECH
Lele16g0151 16 915661 918188 Lele16g0151 16 915661 918188 ECH
Lele13g2266 13 28776579 28779048 Lele16g0151 16 915661 918188 hybridization
Lele14g2202 14 27120825 27123350 Lele16g0151 16 915661 918188 hybridization