Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0145 ATGCAAGACATTTTCGGATCAGTTCGCCGATCACTGGTGTTTCGTACTACGCCGGAAAACGAAGAAGCCTCACTTGGAGGAACCCTAGTTGATAAGATCAATTCTTGCATCCGCAAGTCCAGAGTCTTCTCTAAACCTTCTCCGGCGTCTCCGCCATTGCCACCCATCACAAAGGAATCTTCGCCGATGATCCGATGGCGTAAGGGCGAGTTGATCGGATGCGGTGCCTTTGGCCGAGTTTACATGGGCATGAATCTTGATTCTGGAGAGCTTCTAGCAGTAAAGCAGGTTCTGATCGCGGCTAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAGGAACTTGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCTCATCCCAATATTGTTAGATATTTGGGTACAGTTAGGGAGGAGGACACCTTAAATATTCTTCTAGAGTTTGTACCAGGTGGATCCATATCATCACTTTTGGGGAAGTTTGGAGCTTTCCCTGAGGCTGTTATTAGAACTTTCACGAAGCAGTTACTGTTGGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTTGATAATAAAGGGTGCATAAAACTTGCAGATTTTGGGGCGTCCAAACAGGTCATTGAGCTGGCTACCATTTCCGTTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGATATATGGAGCGTTGGCTGTACTGTGATTGAAATGGCCACCGGAAAACCTCCTTGGAGCCAGCAGTACCAAGAGGTTGCCGCTCTCTTCCACATAGGGACAACAAAGTCTCATCCACCAATTCCGGATCATCTCTCTGTTGGAGCAAAAGATTTTCTTTTAAAATGTTTGCAGAAGGAACCAGTCTTAAGGCCATCAGCATCAGAACTGTTGCAGCATCCCTTTGTTACTGGTGAACACATGGGTTCATTTCCTGGGTCATGTACAGCAATGGGAAAATTTGAAGCTCCTTCAGCATCTTGCGCCTCAAACGTCGAAACTTGCTCAACTGTACATCCTGAGGAAGAAGAAAATAAAGAGTATTGGGGAATGGGCAATGATGACATGTGTGAGATTGATGACAAAGATGAGTTCTCTGAAGGGGCTGTTAAATTTAGATCCTCGATGTCAGAAAATATTATGAGTTTCAACCCGATGTCTGATCCCTCTGATGATTGGAGTTGCAAATTTGATGTGAGTCCAGAACTGGATCGTAGTGGAGTTAGTATTACCACTGATGAAATGTACAAGCCTTCTGACCACCTGGAGGCTTCCCATGAGGAGCAGAAAGATTTTTCCTTTTCAGGCGAACCATCAGTATCTGAGGAGGAGGATGAGCTCACGGAGTCAAAAATACAAGCTTTTTTGGATGAGAAGGCTCTAGGACTGAAAAAACTGCAGACACCTTTATATGAAGAGTTCTACAACAGTTTAAATTTAAATACATCTTGTTCTCCCAATGCGGTTGAAGACACAAATGACGAAACTGCTCCAAAGTTCTTGAAATTACCTCCTAAAAGCAGGTCCCCGAATCGGGCACCAATTGGCACCCCATTAAAAGCAGTTGACCATACCGAAAGTCCGGGAAGTACTGGCCGTTCCTCCCCAAATGTTGGGAATGCAACTGAACATAACTCACAGAACATACCATCACCGCCCCGTAATGAATGGAAAGGATTGCTAGTTGATTCCCAGCAGGAGCCTTCCGGCCCAAGTTTAAGCTTTGCTGAGAGACAGAGGAAGTGGAAAGAAGAACTTGACCAGGAGCTTGAGAGAAAGCGCGAAATGATGCGTCAAGGTGGTATAGGGGGGAAAACGTCATCGCCAAAGGATCGAGCCTTCAATCGGCAGAGAGAACGGACAAGGTTTGCATCACCCAGCACATAA 1962 0.4546 MQDIFGSVRRSLVFRTTPENEEASLGGTLVDKINSCIRKSRVFSKPSPASPPLPPITKESSPMIRWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTFTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVIELATISVAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPDHLSVGAKDFLLKCLQKEPVLRPSASELLQHPFVTGEHMGSFPGSCTAMGKFEAPSASCASNVETCSTVHPEEEENKEYWGMGNDDMCEIDDKDEFSEGAVKFRSSMSENIMSFNPMSDPSDDWSCKFDVSPELDRSGVSITTDEMYKPSDHLEASHEEQKDFSFSGEPSVSEEEDELTESKIQAFLDEKALGLKKLQTPLYEEFYNSLNLNTSCSPNAVEDTNDETAPKFLKLPPKSRSPNRAPIGTPLKAVDHTESPGSTGRSSPNVGNATEHNSQNIPSPPRNEWKGLLVDSQQEPSGPSLSFAERQRKWKEELDQELERKREMMRQGGIGGKTSSPKDRAFNRQRERTRFASPST 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0145 653 Pfam Protein kinase domain 67 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0145 653 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 52 336 - -
Lele16g0145 653 MobiDBLite consensus disorder prediction 447 473 - -
Lele16g0145 653 Coils Coil 604 624 - -
Lele16g0145 653 SUPERFAMILY Protein kinase-like (PK-like) 65 329 IPR011009 -
Lele16g0145 653 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Lele16g0145 653 Gene3D Transferase(Phosphotransferase) domain 1 65 359 - -
Lele16g0145 653 MobiDBLite consensus disorder prediction 602 624 - -
Lele16g0145 653 MobiDBLite consensus disorder prediction 552 578 - -
Lele16g0145 653 MobiDBLite consensus disorder prediction 511 653 - -
Lele16g0145 653 Coils Coil 99 126 - -
Lele16g0145 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Lele16g0145 653 CDD STKc_MAPKKK 65 328 - -
Lele16g0145 653 ProSiteProfiles Protein kinase domain profile. 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0145 653 SMART serkin_6 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0145 653 FunFam Serine/threonine-protein kinase STE11 62 156 - -
Lele16g0145 653 FunFam Mitogen-activated protein kinase kinase kinase 2 65 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0145 Lele-ChrLele16 860562 864848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0145 1 651 MAP Kinase Kinase Kinase AT1G54960 56.691 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele16g0145 Pkinase 8.8e-71 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2273 13 28836038 28840659 Lele16g0145 16 860562 864848 hybridization
Lele14g2208 14 27180248 27184754 Lele16g0145 16 860562 864848 hybridization