Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0141 ATGAGTGTTGATCTGGAATCGTTAGCGGAGGCGACCTCTGGCGCCATAGGATCGCTCTTGAGCACGACCATCTTGTATCCGCTTGACACCTGTAAGACCAAGTACCAAGCCGACTCTCGGGCTCATGGCCGCCAAATATACAGGTCTTTGATCCAACTCATCACTCATCACTCCATCGTTTCTTTGTTTTTTTTCTTCGTTCGGAACCTCTCTAATGTGTTATGGGAAGCAATATCTTCCCGTCAGGTGCTTTCCCTTTATCAGGGTCTGGGAACAAAAAACCTTCAATCCTTCATTTCGCAGTTCGTCTACTTCTATGGCTACAGCTACTTTAAAAGAATGTATCTGCAGAAGAGCGGTTCTAAACGTATTGGAACCAAAGCAAACTTGGTGATTGCTGCTGCTGCGGGGGCCTGCACTGCTATTGTGACTCCGCCCCTGGATACAGCCTCTTCAAGGATGCAGACGAGTGATTTTGGAAAATCTGAAGGGCTTTTGAAGACCCTTACAGAAGGCACTTGGGCCGATGCATTTGATGGTCTCAGTATTTCCTTACTACTGACCTCAAACCCAGCAATTCAGTATACAGTTTTTGATCAGCTGAAACAACGGGCCCTGAAGAATCAGCAAAACAGCGTAGACAGAGGATCATCTCCAGCATCCCTTTCTGCATTTATGGCCTTTCTCTTGGGAACTATTTCAAAGAGTGTTGCTACCGTCTTAACGTATCCAGCTATCAGGTGCAAGGTGATAATTCAAGCTGCAGACAATGAGGAAAAATCAGCCTCAAAACCACAGAAAAAGTCAGGGAAAACAGTTTGTGGAGTTCTCTGTGCTATATGGCAAAGGGAGGGCTTACCGGGCTACTTCAAAGGATTGCATGCTCAAATCTTAAAGACTGTTTTGAGCTCAGCATTGCTTTTGACGATAAAGGAGAAGATCTCTGCCACTACCTGGGTACTTATACTTGCAATTAGAAGGTTACTGTTGCTCCCGAAGGGTAGAGCTGCTTCAGATCCGGGACAGACATTTCCTCCATCTGTACCGCCAGGGAAGATTTCTGGTGGTTCATGGCCTCCTCGTGATACTGACGATACATTTTCCAGTCCTGTATCTGGTTCTGATGAATCCCAGCAGAGTGGCTGGATTCGAGCTTTCACAGTAGCCACATACAGACCATACTTTGATATTGACACTTCAGATGTTCTTGAGAGGATTAAAGATTCTAGCCCTTTCTTTCTTTCTGTCTTTTCTCAAAAGAACGTGGACATGGATATGAAAAAAATGATGAAATGGTATGGGCCTTTCTGGATCTGTGCTACTTTAATATTTGTAGCAGCCTCTATTGGCGCATTTGTGACATATATAGCACACAAGTTGAAGAACAAGGAATGGAGCTATGACATAAATCTGGTGACTTGGGCAGCTGGTTTGTTGTATGGTTATGTCACCATTGTTCCTCGTTGTCTATATGTAATCCTCAAATACTTATCTGCACCATCCAGCCTTGCTCAATTATTCTGTCTCCACGGATGTTCCATTTTTGTCTTTATTCCGGCTCTGTGTTTGTCAATTGTGCCATTGGAGATATTCAGATGGGCGATTGCAGGTGTGGCTGGATTCATGTCTGCAACATTTGTGGCACTTAACCTCCGCGCACATATAGAATCTGCAGGAGAAAGGTGGTTCTTGATTGTTGCTGGCATCTTTGTGTTGCAGCTGGCTCTAGCTGTTGTCCTAAAGTTGTATCTCTTCACAGTATCGGATCGTTCAATACAAAACTTTGCTGAAAATCGCAGTACCTATTTTCCAGATCGGATTCCTCTTTTCAATCAATTTCGTTATAGATGTCAATATAGGCTTAGCTCCATTAAAACGAACACTCTTCGATGCCCTGCAATACACAAAGCAATATTGACTTCAGAACTTGACCCCATGAATGATAGAATTTCATAA 1956 0.4381 MSVDLESLAEATSGAIGSLLSTTILYPLDTCKTKYQADSRAHGRQIYRSLIQLITHHSIVSLFFFFVRNLSNVLWEAISSRQVLSLYQGLGTKNLQSFISQFVYFYGYSYFKRMYLQKSGSKRIGTKANLVIAAAAGACTAIVTPPLDTASSRMQTSDFGKSEGLLKTLTEGTWADAFDGLSISLLLTSNPAIQYTVFDQLKQRALKNQQNSVDRGSSPASLSAFMAFLLGTISKSVATVLTYPAIRCKVIIQAADNEEKSASKPQKKSGKTVCGVLCAIWQREGLPGYFKGLHAQILKTVLSSALLLTIKEKISATTWVLILAIRRLLLLPKGRAASDPGQTFPPSVPPGKISGGSWPPRDTDDTFSSPVSGSDESQQSGWIRAFTVATYRPYFDIDTSDVLERIKDSSPFFLSVFSQKNVDMDMKKMMKWYGPFWICATLIFVAASIGAFVTYIAHKLKNKEWSYDINLVTWAAGLLYGYVTIVPRCLYVILKYLSAPSSLAQLFCLHGCSIFVFIPALCLSIVPLEIFRWAIAGVAGFMSATFVALNLRAHIESAGERWFLIVAGIFVLQLALAVVLKLYLFTVSDRSIQNFAENRSTYFPDRIPLFNQFRYRCQYRLSSIKTNTLRCPAIHKAILTSELDPMNDRIS 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0141 651 Gene3D Mitochondrial carrier domain 2 63 IPR023395 -
Lele16g0141 651 MobiDBLite consensus disorder prediction 361 377 - -
Lele16g0141 651 ProSiteProfiles Solute carrier (Solcar) repeat profile. 222 317 IPR018108 -
Lele16g0141 651 Gene3D Mitochondrial carrier domain 65 318 IPR023395 -
Lele16g0141 651 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 204 IPR018108 -
Lele16g0141 651 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 1 335 IPR045900 GO:0005347|GO:0006635|GO:0015217
Lele16g0141 651 ProSiteProfiles Solute carrier (Solcar) repeat profile. 5 114 IPR018108 -
Lele16g0141 651 SUPERFAMILY Mitochondrial carrier 7 313 IPR023395 -
Lele16g0141 651 Pfam Mitochondrial carrier protein 6 118 IPR018108 -
Lele16g0141 651 Pfam Mitochondrial carrier protein 125 208 IPR018108 -
Lele16g0141 651 Pfam Mitochondrial carrier protein 222 315 IPR018108 -
Lele16g0141 651 Pfam Yip1 domain 431 579 IPR006977 GO:0016020
Lele16g0141 651 MobiDBLite consensus disorder prediction 338 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0141 Lele-ChrLele16 817117 826529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0141 86 339 Chloroplast and Mitochondria Gene Families AT1G25380 26.415 3.68e-11 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2267 13 28790602 28795113 Lele16g0141 16 817117 826529 CCT
Lele14g2203 14 27134674 27137374 Lele16g0141 16 817117 826529 CCT
Lele15g0145 15 870825 875340 Lele16g0141 16 817117 826529 CCT
Lele16g0141 16 817117 826529 Lele13g2288 13 28902884 28906662 CCT
Lele16g0141 16 817117 826529 Lele15g0125 15 755441 759169 CCT
Lele16g0141 16 817117 826529 Lele16g0141 16 817117 826529 ECH
Lele13g2279 13 28867711 28873426 Lele16g0141 16 817117 826529 hybridization
Lele14g2214 14 27217885 27225146 Lele16g0141 16 817117 826529 hybridization