Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0138 ATGGCTTCCGGTGACCAGCAATTTCCCCCACAGAAACAAGACAAAGTTCCCGGGAAAGAGCATGCTATGGATCCGATACCTCAATTCACCATCCCCGACTACAAGCCCTCAAATAAACTTCAAGGGAAGATGGCACTGATTACTGGAGGTGACTCTGGGATTGGACGAGCCGTATGCAATTTATTTGCGTTGGAGGGTGCCAGCGTGGCATTCACATATGTGAAGGGAGATGAAGAGAAGGACGCGAAGGACACGCTTGAAATTATCAAGAAAGCAAAAACTGAGGATGCCAAGGAGCCCATAGCCATACCTGCCGACTTGGGTTTTGATGAAAACTGCAAGAAAGTAGTTGATGAGGTCGTCAAAGCGTTCGGCTGCATTGACATTCTGATCAACAATGCAGCTGAGCAATACGAGGCTGGATCTGTGGAGGAGATTGACGAGAAAAGGCTCGAGAGGGTGTTCAGAACTAATATCTTCTCCTATTTCTTCGTGACCAGGCATGCCCTGAAGCACATGAAGGCAGGAACCAGTATTATCAACACGACATCAGTGAATGCATACAAAGGAAACGCCAAATTACTGGACTACACAGCGACGAAGGGTGCGATTGTGGCATTTACGAGGGGTCTGTCTCTTCAATTGGTGAGCAAGGGAATAAGAGTGAACGGGGTTGCCCCGGGACCCATATGGACTCCGTTAATACCAGCTTCCTTCAAGGAGGGAGAAGTATCTCAGTTTGGAGCTCAGGTGCCGATGAAGAGAGCTGGCCAGCCTATCGAGGTTGCTCCCTCCTATGTATTTCTTGCCTGCAATCATTGCTCCTCTTACATTACTGGCCAAGTCCTTCACCCCAATGGTGGAACTGTTGTAAATGGCTGA 882 0.4864 MASGDQQFPPQKQDKVPGKEHAMDPIPQFTIPDYKPSNKLQGKMALITGGDSGIGRAVCNLFALEGASVAFTYVKGDEEKDAKDTLEIIKKAKTEDAKEPIAIPADLGFDENCKKVVDEVVKAFGCIDILINNAAEQYEAGSVEEIDEKRLERVFRTNIFSYFFVTRHALKHMKAGTSIINTTSVNAYKGNAKLLDYTATKGAIVAFTRGLSLQLVSKGIRVNGVAPGPIWTPLIPASFKEGEVSQFGAQVPMKRAGQPIEVAPSYVFLACNHCSSYITGQVLHPNGGTVVNG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0138 293 MobiDBLite consensus disorder prediction 1 35 - -
Lele16g0138 293 Pfam Enoyl-(Acyl carrier protein) reductase 52 288 - -
Lele16g0138 293 FunFam Short-chain dehydrogenase reductase 31 292 - -
Lele16g0138 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Lele16g0138 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Lele16g0138 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Lele16g0138 293 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Lele16g0138 293 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Lele16g0138 293 PRINTS Glucose/ribitol dehydrogenase family signature 44 61 IPR002347 -
Lele16g0138 293 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Lele16g0138 293 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Lele16g0138 293 PRINTS Glucose/ribitol dehydrogenase family signature 252 272 IPR002347 -
Lele16g0138 293 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Lele16g0138 293 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 17 288 - -
Lele16g0138 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 291 IPR036291 -
Lele16g0138 293 CDD SDR_c1 17 292 - -
Lele16g0138 293 Gene3D - 2 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0138 Lele-ChrLele16 803681 804818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0138 40 293 Miscellaneous Gene Families AT2G29290 31.395 3.86e-24 96.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2274 13 28841051 28842515 Lele16g0138 16 803681 804818 CCT
Lele14g2209 14 27185234 27186701 Lele16g0138 16 803681 804818 CCT
Lele15g0137 15 821579 823031 Lele16g0138 16 803681 804818 CCT
Lele16g0144 16 841010 859880 Lele16g0138 16 803681 804818 CCT
Lele13g2284 13 28887644 28888775 Lele16g0138 16 803681 804818 hybridization
Lele14g2218 14 27237586 27238723 Lele16g0138 16 803681 804818 hybridization