Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0131 ATGGGAGTCAATACTACAGTCGACGCCATCAAGCCTCATACCGGCATGCACCACCACTTACATCCACAAAACCATGACCATGATTCCCAGTTCTCCTCCGAGACCATTCTCATTATCATCGTAGCGGTGGCCTCGGGATTGGTGCTCATGTTTACCATATTTCTGATCATATTCATGCTTCGTAGGCTGAAATGCTTCCCCAAGAATTCATCTCTGAATGATAACAGAAACTGCACAGCACTTGACTACGCGAGTTGCAGGTTCATGGCTTCCACGCCAATGAACTTGGGTTCCAGTCCAGCTGTGAAGGGAGGGTGTATGAGTATGGGGAGCGTGAGCATGAGCAGGGAAGGATGTAATAATAAAGTAAGAGGAGTGCAAGTGTTCACGTATAGGGAGCTACAAGAGGCTACAGAAGGATTCAGGGAAGCGAATGTGATTGGGAGTGGAGGCTCTGGTTCCATTTACAGAGGAGTCTTAAGTGATGGCACTGTAGCTGCAATCAAACTGCTGCGAAGGCAAGGTAGGCAGGGGGAGCGTGCCTTCCGAATTGAGGTGGATATGCTAAGCCGCTTGCACTCTCCATATTTTGTGGAGTTACTTGGGTACAGTGCAGACCAGCAGCACAGGTTACTGATATTCGAATTCGTTCCCAATGGAACACTGCATCAGCATCTGCACTGTGGTATGAGTCAATCTAAGCCCTTGAATTGGTGGACCCGCTTGAGGATAGCCCTTGATTGTGCCAGAGCTCTTGAATTCCTTCATGAGCATACGGTCCCGCCGGTGATCCATCGTGACTTCAATTGCCACAACGTTCTACTGGATCACAACTTTCGAGCCAAGATCAACGCTCAGATTTCCACCCCCGCGTTAGGGACCACTGGATATCTAGCTCCAGAATATGCGTGTTCGGGGAAGCTTACCACAAAGTCAGATGTATACAGCTACGGGGTGGTTCTCTTGGAGTTGCTCACTGGACGTGTGCCCGTTGATATCAAACGACCTCCTGGAGAACATGTTCTTGTCTCTTGGGCTCTTCCAAGGTTAACCAACAGAGAAAAGCTTGGGGAGATGGTTGACCCAGTTCTGCGAGGACACTACTCCAAGAAGGATCTAATTCAGATAGGTGTAATTGCAGCCATGTGCGTACAGCCGGAAGCGGATTACAGGCCGCTCATGACAGATGTCGTGCAGTCTCTAATACCACTTGTCAGGAACTCGAGTGCAGGTTCATTTGGTTCCCCAAAACTTCAGAGACAGACATCAAGTCCAGTCTATATTTAG 1287 0.4895 MGVNTTVDAIKPHTGMHHHLHPQNHDHDSQFSSETILIIIVAVASGLVLMFTIFLIIFMLRRLKCFPKNSSLNDNRNCTALDYASCRFMASTPMNLGSSPAVKGGCMSMGSVSMSREGCNNKVRGVQVFTYRELQEATEGFREANVIGSGGSGSIYRGVLSDGTVAAIKLLRRQGRQGERAFRIEVDMLSRLHSPYFVELLGYSADQQHRLLIFEFVPNGTLHQHLHCGMSQSKPLNWWTRLRIALDCARALEFLHEHTVPPVIHRDFNCHNVLLDHNFRAKINAQISTPALGTTGYLAPEYACSGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPPGEHVLVSWALPRLTNREKLGEMVDPVLRGHYSKKDLIQIGVIAAMCVQPEADYRPLMTDVVQSLIPLVRNSSAGSFGSPKLQRQTSSPVYI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0131 428 Gene3D Phosphorylase Kinase; domain 1 112 216 - -
Lele16g0131 428 Gene3D Transferase(Phosphotransferase) domain 1 217 413 - -
Lele16g0131 428 FunFam Receptor-like serine/threonine-protein kinase ALE2 217 417 - -
Lele16g0131 428 SUPERFAMILY Protein kinase-like (PK-like) 123 401 IPR011009 -
Lele16g0131 428 ProSiteProfiles Protein kinase domain profile. 141 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0131 428 Pfam Protein tyrosine and serine/threonine kinase 145 401 IPR001245 GO:0004672|GO:0006468
Lele16g0131 428 PANTHER OS07G0668900 PROTEIN 120 409 - -
Lele16g0131 428 ProSitePatterns Protein kinases ATP-binding region signature. 147 169 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0131 Lele-ChrLele16 775056 777428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0131 103 425 Receptor kinase-like Gene Family AT3G58690 53.488 1.03e-125 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lele16g0131 PK_Tyr_Ser-Thr 1.3e-30 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2293 13 28924378 28926766 Lele16g0131 16 775056 777428 hybridization
Lele14g2223 14 27273329 27275695 Lele16g0131 16 775056 777428 hybridization