Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0129 ATGTGTCTCCCTGAGGGAGAGATAGACAGCCAGACGTCCATGGCGCTCGAAACCGTTGTTTTCCCTCCGGACTACCCATTTGGCTATGGCGCTTCCAAGGACCCCTACCCTCTCTGGCCCTTTCACGACGATTTCAGCCTTCCCAAACAGGAAGACCACCACGGCTTTCTGAATCTTCTCGACAACCAAACAGAAAATTATGGCTTCGGAGACTGGTCTAATATTTGCTCTTCTTCTCCCCCATCGTCAGTGTTGCCCCACTCGAGCGAACTGCGTCTCCCGAATCACACGACCTCTGACACCAGTAACAACCCAACGCCCTCGTCTGAATCCCTCCACGTGGATTCCTCGAATTCTCGTCCCAAGAGACGCAGGGCCAGGACCCGGAAGAACAAGGAGGAGATCGAGAACCAGAGAATGACGCACATTGCGGTGGAGCGCAATCGGAGAAAACAGATGAACGAGTATCTCTCTGTTCTTCGCTCTCTCATGCCCGACTCCTACGTCCAAAGGGGCGATCAAGCTTCCATAATAGGGGGTGCTATTAACTTTGTGAAGGAGCTGGAGCAGAGGCTACAATTTATGGGGGGTCAGAAAGAAACAGAGGCGAAATCTCAGAGCAAGCCGTTTTCGGAGTTCTTCACGTTTCCTCAGTATTCGACGAGCCTGAGCGGAAGCGGCGAGTGTTCGGCGACGGCGAGGGGGGAGAAAGTGGGGGAGGTATCGTCGGGGGCGTGCATCGCAGATATAGAAGTGACGATGGTGGAGAGCCACGCGAATCTGAAAATACGGTCCAAGAAGAGGCCGAAGCAGCTGTTGAAGATGGTGTCGGCGTTGTACAGCATGAGCCTCACGATCTTGCATCTCAACGTGACGACCACCGCCGATATTGTGCTCTACTGCATCAGCGTCAAGTTAGAGGAAGAGTGCAAGCTGGGATCAGTGGAGGAGATAGCGGGAGCAGTGTACAAAACGTTGGAGAGGATCGAACAAGAGTGTGTGCAGAACAATCAAGATCCGAACACGAGCTAG 1032 0.5339 MCLPEGEIDSQTSMALETVVFPPDYPFGYGASKDPYPLWPFHDDFSLPKQEDHHGFLNLLDNQTENYGFGDWSNICSSSPPSSVLPHSSELRLPNHTTSDTSNNPTPSSESLHVDSSNSRPKRRRARTRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFMGGQKETEAKSQSKPFSEFFTFPQYSTSLSGSGECSATARGEKVGEVSSGACIADIEVTMVESHANLKIRSKKRPKQLLKMVSALYSMSLTILHLNVTTTADIVLYCISVKLEEECKLGSVEEIAGAVYKTLERIEQECVQNNQDPNTS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0129 343 MobiDBLite consensus disorder prediction 80 137 - -
Lele16g0129 343 Pfam Helix-loop-helix DNA-binding domain 138 189 IPR011598 GO:0046983
Lele16g0129 343 MobiDBLite consensus disorder prediction 80 115 - -
Lele16g0129 343 PANTHER MAX DIMERIZATION, MAD 77 333 - -
Lele16g0129 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 188 IPR011598 GO:0046983
Lele16g0129 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 206 IPR036638 GO:0046983
Lele16g0129 343 CDD bHLH_AtFAMA_like 140 208 - -
Lele16g0129 343 Gene3D - 124 205 IPR036638 GO:0046983
Lele16g0129 343 SMART finulus 143 194 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0129 Lele-ChrLele16 759080 760324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0129 14 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.589 1.53e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele16g0129 HLH 4.8e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2285 13 28889292 28892007 Lele16g0129 16 759080 760324 CCT
Lele15g0128 15 768910 771646 Lele16g0129 16 759080 760324 CCT
Lele16g0137 16 800766 803188 Lele16g0129 16 759080 760324 CCT
Lele16g0129 16 759080 760324 Lele16g0129 16 759080 760324 ECH
Lele13g2295 13 28942694 28943922 Lele16g0129 16 759080 760324 hybridization
Lele14g2225 14 27291161 27292380 Lele16g0129 16 759080 760324 hybridization