Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0116 ATGCCGATGGGCATGACCGTAAAGACCAGTCATGTAGAGCAGGTGCTTTGGGCTTGCTTCGACAGGCTAGAACTTGGCCCATCTTCTTTCAAACATGTCCTCTTACTCGGATACTCCAAGGGCTTTCAAGTTCTTGATGTGGATGATGCCTCTAAGGTCCGTGAACTTGTCTCCAAACGGGATGATCCAGTTTCATTTTTACAGATGCAGCCTATCCCTACAAGGTCTGAGGGGTGTAAAGGATTTAGTGCGTCACATCCATTACTCTTGATCGTTGCATGTGATAAATCAAAGATCCCAGGTACAATGCAAAATAGAAGAGATGGATATACTGAACCTCAAGCTGAAAACATTGTCAGCTCAGCTACTGTTGTTCGATTTTACTCACTTAGTTCCCATAACTATGTTCATGCCCTGAGATTTCGATCAACTGTATATATGGTTAGATGCAGTCCCCAAATAGTGGCTGTGGGTGTTGCTGCACAAGTAAGTGTCCTCACTTACCCTGTACCTCAGTTGGGAGTCCAAGGAATGGTTGGGGTTAATATGGGCTATGGTCCGATGGCTGTAGGGACCCGTTGGTTAGCTTATGCTTCTATCAACCCATTGCCATCAAATGCAGGTCATCTAAGTCCTCAGAGTCTTACACCTCCAGCTGTCAGCCCATCAACATCACCTGGCAATGGAAACCTGGTCGTTATCAAGGACTCTGTTTCTAGAGCTGTTGTGGCACAATTTAGAGCCCATACTAGTCCCATCTCTGCTTTGTCTTTGGACCCTAGTGGGACACTTCTAGTTACTGCATCAATTCACGGTAACAGCATTAATATATTTCGAATTATGCCATCCTGCTCAAAGAATGGATCAGGTTCCCAAAGCAGTGATTGGAGTTGTTCTTATGCACATCTATACAAGCTACACCGTGGCATGACATCAGCAGTATGCTTCTATTCTCTATATTCATCTAAGACGCTTTTTTTTTATCTACTTAGGAAGGATTTCTACTTGTGTATACAGGTTATACAAGATATATGTTTTAGTCATTACAGTCAGTGGGTTGCAATTATTTCATCCAAGGGTACTTGTCATATCTTCGTACTTGCCACATTTGGTGGTGAGACGGTTCTTCAGATGCAGAGTCCAGACACGGAGAAACCGACACTTTTGCCAACTTTTTCTCTGCCGGGGTGGTTCACTCCTAATTTCACAGTAAACCAGCAACAGTTTTCCTTCACACCCCCACCTCCTGTCACTCTCTCTGTGGTTAGCAGAATAAAAAATAGTAATGCTGGATGGCTTAATACTGTTAGTAATGCTGCATCTTCTGCAGCAGGGAAAGTCTCAGTTCCATCTGGTGCTGTTTCAGCCGTCTTTCATAGTTCCATGCCTTATGATACCCAGAATGCACACTCGAAGGTTCAGGCCCTGGAATACTTATTAGTATATACTCCTTCTGGTCATTTGGTTCAGTATAAACATTCCTTCAATGGCAGCTGA 1497 0.4375 MPMGMTVKTSHVEQVLWACFDRLELGPSSFKHVLLLGYSKGFQVLDVDDASKVRELVSKRDDPVSFLQMQPIPTRSEGCKGFSASHPLLLIVACDKSKIPGTMQNRRDGYTEPQAENIVSSATVVRFYSLSSHNYVHALRFRSTVYMVRCSPQIVAVGVAAQVSVLTYPVPQLGVQGMVGVNMGYGPMAVGTRWLAYASINPLPSNAGHLSPQSLTPPAVSPSTSPGNGNLVVIKDSVSRAVVAQFRAHTSPISALSLDPSGTLLVTASIHGNSINIFRIMPSCSKNGSGSQSSDWSCSYAHLYKLHRGMTSAVCFYSLYSSKTLFFYLLRKDFYLCIQVIQDICFSHYSQWVAIISSKGTCHIFVLATFGGETVLQMQSPDTEKPTLLPTFSLPGWFTPNFTVNQQQFSFTPPPPVTLSVVSRIKNSNAGWLNTVSNAASSAAGKVSVPSGAVSAVFHSSMPYDTQNAHSKVQALEYLLVYTPSGHLVQYKHSFNGS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0116 498 Pfam Breast carcinoma amplified sequence 3 414 492 IPR022175 -
Lele16g0116 498 Gene3D - 111 384 IPR015943 GO:0005515
Lele16g0116 498 SMART WD40_4 239 279 IPR001680 GO:0005515
Lele16g0116 498 SMART WD40_4 331 366 IPR001680 GO:0005515
Lele16g0116 498 SUPERFAMILY WD40 repeat-like 32 365 IPR036322 GO:0005515
Lele16g0116 498 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 231 492 IPR045142 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0116 Lele-ChrLele16 703374 706595 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0116 16 703374 706595 Lele13g2316 13 29072845 29079038 CCT
Lele16g0116 16 703374 706595 Lele14g2251 14 27423399 27428485 CCT
Lele16g0116 16 703374 706595 Lele15g0097 15 591748 595288 CCT
Lele16g0116 16 703374 706595 Lele16g0104 16 635962 641474 CCT
Lele13g2308 13 29015305 29020492 Lele16g0116 16 703374 706595 hybridization