Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0104 ATGGCTTTTGATTTAAGTACCGCGTTTCCGAAATTGCAACTGCTTATGACTTCTGATCACGCTTCCGTGGTGTCCATGAATCTATTTGTGGCACTCCTGTGTGCTTGTATTGTCATTGGCCATCTTCTCGAGGAGAATCGATGGGTGAATGAGTCCATCACCGCCCTTTTGATTGGTCTTTGCACTGGCGTTGTCATTTTGCTGATAAGGGGTGGTCAAAACTCGCATCTTCTTGTTTTCAGCGAAGATCTTTTCTTTATATACCTCCTGCCACCTATCATATTTAACGCCGGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTAAATTTCATCACTATTGTGCTGTTTGGTGCTGTTGGTACATTAATATCTTGTGCCATCATAACTTTTGGTGTTACACAAGTTTTTAGAAAGATGGGCATTGGACCACTTGAGATTGGGGATTATCTAGCAATTGGTGCAATATTTGCCGCAACAGATTCTGTGTGCACATTGCAGGTGTTAAATCAGGACGAGACACCTTTACTCTACAGCCTTGTGTTTGGAGAGGGTGTTGTGAATGATGCTACGTCTGTTGTGCTTTTCAATGCAATCCAAAGCTTTGACCTCAACAAACTAGACTCTGGAATTGCTTTAGAATTTCTTGGCAACTTTCTATACCTGTTTATTGCAAGCACATTGCTCGGTGTTCTGACTGGTTTGCTTAGTGCTTATATCATTAAAAAGCTCTATATTGGCAGGCACTCCACAGATCGTGAAGTTGCTCTAATGATGCTGATGGCATACCTTTCCTACATGCTGGCTGAATTATCCTATCTGAGTGGTATCCTCACTGTATTCTTCTGTGGGATTGTAATGTCTCATTATACTTGGCATAACGTGACTGAGAGTTCCAGAGTCACTACGAAGCATGCCTTTGCAACTTTGTCGTTTGTTGCTGAGACCTTTATCTTCCTTTATGTTGGTATAGATGCCCTGGACATTGAAAAATGGAGGTTTGTTAGTGATAGCCCTGGAAAATCAATAGCAGTGAGTTCAGTGTTGTTGGGTCTAGTACTCGCTGGAAGAGCAGCTTTTGTTTTCCCCCTATCCTTCCTATCCAACTTGGCTAAAAAGTCGCCAAATGAGAAAATCAGCCTCCGGCAGCAAGTGATCATATGGTGGGCTGGTCTGATGAGAGGTTCTGTTTCAATGGCACTTGCGTATAATCAGTTCACCATGTCGGGCCATACTCAATTGCGATCCCATGCAATGATGATCACTAGCACAATTACAGTAGTGCTCTTCAGCACAGTGGTCTTTGGTTTAATGACTAAGCCACTCATAAGGTATTTGCTGCCACACACAAGCAGCGTGGTCACGACGGAATCATCTACTCCAAAATCTTTTCACGTGCCACTTCTGGGGCCTTCCCAAGATTCCGAAGCTGATATCGATGGAAATTCGCTTATTCGTCCAAGTAGCATTCGTTTATTACTCACCACTCCTACACACACAGTTCATCGCTACTGGCGTAAGTTTGATAACGCATTCATGCGCCCAGTTTTTGGAGGCAGGGGTTTTGTTCCTGTGGAGCCTGGCTCACCTACTGAACGAAACGGTCATCACACCTTTATGGAGATAAAGGTTGTGCGCCATAGGCCACGTCTCCTTGAAAAGCCAGAACATTGTAAATCAGATTCTCTGGCAGACAATGGTCATCACAACACATTGCATTAA 1719 0.4351 MAFDLSTAFPKLQLLMTSDHASVVSMNLFVALLCACIVIGHLLEENRWVNESITALLIGLCTGVVILLIRGGQNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFITIVLFGAVGTLISCAIITFGVTQVFRKMGIGPLEIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNKLDSGIALEFLGNFLYLFIASTLLGVLTGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYMLAELSYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAETFIFLYVGIDALDIEKWRFVSDSPGKSIAVSSVLLGLVLAGRAAFVFPLSFLSNLAKKSPNEKISLRQQVIIWWAGLMRGSVSMALAYNQFTMSGHTQLRSHAMMITSTITVVLFSTVVFGLMTKPLIRYLLPHTSSVVTTESSTPKSFHVPLLGPSQDSEADIDGNSLIRPSSIRLLLTTPTHTVHRYWRKFDNAFMRPVFGGRGFVPVEPGSPTERNGHHTFMEIKVVRHRPRLLEKPEHCKSDSLADNGHHNTLH 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0104 572 MobiDBLite consensus disorder prediction 552 572 - -
Lele16g0104 572 Pfam Sodium/hydrogen exchanger family 30 442 IPR006153 GO:0006812|GO:0015299|GO:0016020|GO:0055085
Lele16g0104 572 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Lele16g0104 572 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Lele16g0104 572 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Lele16g0104 572 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Lele16g0104 572 PANTHER SODIUM/HYDROGEN EXCHANGER 17 540 IPR018422 GO:0006812|GO:0015299|GO:0016020
Lele16g0104 572 Gene3D - 146 197 - -
Lele16g0104 572 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 25 447 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0104 Lele-ChrLele16 635962 641474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0104 11 535 Antiporters AT3G05030 77.256 0.0 840
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2308 13 29015305 29020492 Lele16g0104 16 635962 641474 CCT
Lele15g0106 15 637658 642832 Lele16g0104 16 635962 641474 CCT
Lele16g0116 16 703374 706595 Lele16g0104 16 635962 641474 CCT
Lele16g0104 16 635962 641474 Lele16g0104 16 635962 641474 ECH
Lele13g2316 13 29072845 29079038 Lele16g0104 16 635962 641474 hybridization
Lele14g2251 14 27423399 27428485 Lele16g0104 16 635962 641474 hybridization