Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele16g0099 | ATGGTTGGTTCAAGAGTTTCCGCCATGCACCGTGTGGGTAGTGCAGGGAACACAAGCAATTCAATTCGACCTCGAAAGGAGAAGAGGCTAACATATGTGTTGAATGACTCTGATGACACCAAGCATTTTGCAGGCATAAATTGTTTGGCTTTGCTCAAGTCATCGGTATCTGATGGGTCTGATTATCTCTTCACTGGAAGCCGTGATGGCACACTAAAACGATGGGAGTTGGCCGAGGATGCTGCAACATGCTCAGCTACTTTTGAATCTCATGTGGACTGGGTTAATGACTCTGTTCTTGTGGGTGATAATAAGCTTGTTTCTTGTTCTTCAGATACTAACCTCAAGATATGGAATCCCTTGTCTGATGGAACTTGTACTAGGACTCTCCGCCAACACTCAGATTATGTTACTTGCCTTGCAGCAGCTGAAAAAAATAGCAATATTGTTTCCTCTGGTGGACTTGGTGGGGAGGTTTTTATATGGGATCTTGAAGCTTCCCTTGTGCTAGTCTCTCAGTGCAATGATATTTTGGACGAGGGTTGTTCAAATGGTATACATGGGCCTGGAAACTCCTTACCAATGACAAGCTTACGCAACATTAGCTCTGCCAACAATAATATTATCTCTAGTAACACCACTTCCATGCACACTACTCAGTCTCATGGGTACATTCCGATTGCTGCCAAAGGCCACAAGGAGTCTGTATATGCGTTAGCAATGAATGAAGGTGGAACCCTTCTTGTCTCTGGTGGCACAGAAAAGGTTGTACGTGTTTGGGATCCAAGGTCTGGATCAAAGACTATGAAATTGAGAGGGCATACGGATAACATAAGGGCTCTGCTTCTAGATTCAACTGGCAGGTTTTGTCTGTCAGGTTCTTCTGACTCTATGATAAGACTTTGGGATCTTGGTCAGCAGCGTTGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTTGCCAGCACCCCAGCCTTTAGTCATGTTTATAGCGGTGGTAGAGACTTTTCGTTATACTTGACAGATTTGCAAACAAGAGAGAGTGTTTTGCTTTTTACTGGCGAACACCCCATTTTGCAACTGGCTAGGCATGATGATACTGTATGGGTTGCCTCAACAGACTCGTCAGTTCACAGATGGCCTGCTGAAGGATGTAACCCTCAAAAGATTTTCCAAAGGGGCAATTCATTTTTAGCTGGAAATTTGTCCTTTTCTAGGGCAAGGGTGTCTCTTGAAGGATCTACCCCTGTTCCTGTTTATAAAGAACCAACCTTGAGCATTGCTGGCTCCCCAGGAATAGTACAGCATGAAATTTTAAATAATAAGAGGCATGTCCTGACAAAGGATACTGCTGGTTCAGTGAAGTTGTGGGAGATTACTAGAGGTGCTGTCATTGAAGATTATGGAAAGATTTCGTTTGAGGAGAAAAAGCAAGAGCTATTTGAGATGGTTAGCATTCCCACTTGGTTCACAGTGGACACCAGGCTCGGATGTTTATCTGTTCATTTGGACACACCCCAATGCTTCTCTGCAGAGATGTATTCTGCGGACCTAAACATTGTTGGCAAGCCTGAAGATGACAAGGTTAATTTGGCTCGTGAAACCCTTAAAGGGCTCTTGGCACATTGGGTGATGAAACGGAAGCAAAGAATGGGATCACATACTCCTGCTAATGGCGAATTGCTATTGGGAAAGGAAATGACAACCAGAAGTCTTACCCATTCAAGAATTGAGGTTGATAGTAGTACTGAGCACGATGCTGTGGTTTATCCTCCTTTTGACTTTTCTACGGCGTTCCCTCCTTCCATTATTACTGAGGGCAGTCAAGGGGGTCCATGGAGGAAAAAAATTACCGATCTGGATGGAACGGAGGATGATAAAGACTTTCCCTCTTGGTGCTTGGACTGTGTATTGCATAATCGGTTACCTCCCAGAGAAAATACCAAATGCAGTTTCTATTTGCATCCCTGTGAAGGTTCTAGCATTCAGATCCTCACACAAGGGAAGTTAAGTGCTCCACGTATATTGAGAATTCACAAAGTTATTAATTACGTACTAGAAAAGATGGACCTTGACAAACCATTGGATAGCTTAAATGCTGACGGTAGTAGTTTTGTACCGGGACTACAACACCAAGCAGTTGGGGATGGATCTTTCCGATCTGGATTGAAGCCTTGGCAAAAGCGTAGGCCTTCTATTGAGATGTTGTGCAACAATCAGGTCTTGTCTCCTGAGATGAGTTTAGCCACAGTACGTGCTTATATATGGAAGAAATCAGATGACCTGATTCTAAATTATAGAGTGGTTCAAGGAAAATGA | 2328 | 0.4356 | MVGSRVSAMHRVGSAGNTSNSIRPRKEKRLTYVLNDSDDTKHFAGINCLALLKSSVSDGSDYLFTGSRDGTLKRWELAEDAATCSATFESHVDWVNDSVLVGDNKLVSCSSDTNLKIWNPLSDGTCTRTLRQHSDYVTCLAAAEKNSNIVSSGGLGGEVFIWDLEASLVLVSQCNDILDEGCSNGIHGPGNSLPMTSLRNISSANNNIISSNTTSMHTTQSHGYIPIAAKGHKESVYALAMNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLRGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCVHSYAVHTDSVWALASTPAFSHVYSGGRDFSLYLTDLQTRESVLLFTGEHPILQLARHDDTVWVASTDSSVHRWPAEGCNPQKIFQRGNSFLAGNLSFSRARVSLEGSTPVPVYKEPTLSIAGSPGIVQHEILNNKRHVLTKDTAGSVKLWEITRGAVIEDYGKISFEEKKQELFEMVSIPTWFTVDTRLGCLSVHLDTPQCFSAEMYSADLNIVGKPEDDKVNLARETLKGLLAHWVMKRKQRMGSHTPANGELLLGKEMTTRSLTHSRIEVDSSTEHDAVVYPPFDFSTAFPPSIITEGSQGGPWRKKITDLDGTEDDKDFPSWCLDCVLHNRLPPRENTKCSFYLHPCEGSSIQILTQGKLSAPRILRIHKVINYVLEKMDLDKPLDSLNADGSSFVPGLQHQAVGDGSFRSGLKPWQKRRPSIEMLCNNQVLSPEMSLATVRAYIWKKSDDLILNYRVVQGK | 775 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele16g0099 | 775 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 130 | 172 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | SUPERFAMILY | WD40 repeat-like | 43 | 465 | IPR036322 | GO:0005515 | |
| Lele16g0099 | 775 | Gene3D | - | 14 | 186 | IPR015943 | GO:0005515 | |
| Lele16g0099 | 775 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 271 | 312 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 290 | 304 | IPR019775 | - | |
| Lele16g0099 | 775 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 229 | 261 | - | - | |
| Lele16g0099 | 775 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 271 | 304 | - | - | |
| Lele16g0099 | 775 | SMART | WD40_4 | 264 | 303 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | SMART | WD40_4 | 218 | 261 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | SMART | WD40_4 | 306 | 345 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | SMART | WD40_4 | 27 | 76 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | SMART | WD40_4 | 81 | 119 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | SMART | WD40_4 | 123 | 163 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | SMART | WD40_4 | 348 | 384 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | Pfam | WD domain, G-beta repeat | 230 | 261 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | Pfam | WD domain, G-beta repeat | 83 | 119 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | Pfam | WD domain, G-beta repeat | 267 | 303 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | Pfam | WD domain, G-beta repeat | 124 | 163 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | Pfam | WD domain, G-beta repeat | 42 | 75 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 229 | 270 | IPR001680 | GO:0005515 | |
| Lele16g0099 | 775 | CDD | Ubl_WDR48 | 649 | 770 | - | - | |
| Lele16g0099 | 775 | Pfam | Domain of unknown function (DUF3337) | 630 | 770 | IPR021772 | - | |
| Lele16g0099 | 775 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Lele16g0099 | 775 | CDD | WD40 | 42 | 383 | - | - | |
| Lele16g0099 | 775 | Gene3D | - | 190 | 490 | IPR015943 | GO:0005515 | |
| Lele16g0099 | 775 | PRINTS | G protein beta WD-40 repeat signature | 63 | 77 | IPR020472 | - | |
| Lele16g0099 | 775 | PRINTS | G protein beta WD-40 repeat signature | 290 | 304 | IPR020472 | - | |
| Lele16g0099 | 775 | PRINTS | G protein beta WD-40 repeat signature | 248 | 262 | IPR020472 | - | |
| Lele16g0099 | 775 | PANTHER | WD REPEAT-CONTAINING PROTEIN 48 | 85 | 558 | - | - | |
| Lele16g0099 | 775 | FunFam | WD repeat-containing protein 48 | 203 | 490 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele16g0099 | Lele-ChrLele16 | 591726 | 601793 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele16g0099 | 42 | 389 | Miscellaneous Gene Families | AT5G08390 | 23.580 | 7.51e-11 | 63.9 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele13g2318 | 13 | 29094133 | 29098011 | Lele16g0099 | 16 | 591726 | 601793 | CCT | |
| Lele14g2253 | 14 | 27443859 | 27448047 | Lele16g0099 | 16 | 591726 | 601793 | CCT | |
| Lele15g0093 | 15 | 570962 | 574823 | Lele16g0099 | 16 | 591726 | 601793 | CCT | |
| Lele13g2311 | 13 | 29035429 | 29037290 | Lele16g0099 | 16 | 591726 | 601793 | CCT | |
| Lele14g2242 | 14 | 27366630 | 27368488 | Lele16g0099 | 16 | 591726 | 601793 | CCT | |
| Lele15g0103 | 15 | 626140 | 627983 | Lele16g0099 | 16 | 591726 | 601793 | CCT | |
| Lele16g0112 | 16 | 688153 | 690003 | Lele16g0099 | 16 | 591726 | 601793 | CCT | |
| Lele13g2323 | 13 | 29112465 | 29121024 | Lele16g0099 | 16 | 591726 | 601793 | hybridization | |
| Lele14g2255 | 14 | 27453701 | 27461704 | Lele16g0099 | 16 | 591726 | 601793 | hybridization |