LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g0077	ATGTTCGATGGAGTGCCAGAGCAGTTCCACCAATTCATAGCTCCAAGAAACTCCCTTCCTCTTCAACTCTCTTTCCCTACTTTCGATGCTTATAACCCTTCTCCCCATCACTTGCCCCTCCCACCACCGCCACCGCCGCCAAATCTCTTCTCCCCATTGCACCACAAAGATGAACAACACGAGCAGCCAGAAACTAGCATGAACTTACAGATTAATGAAAGAGAACCACAAATTGGCGAGCATGAGCTGATTGATTCCTCCTGGACCGACGATGAAGTGCTTGCTCTTTTGAGGATCAGATCTAGCCTCGACGCTTGGTTCCCTGAACTCACTTGGGAACATGTTTCAAGGAAGCTTGCAGAGCTTGGATTTAAAAGGAGTGCAGACAAGTGCAAGGAGAAGTTCGAAGAAGAAACCAGTTACTTCAACAACATCCATTACACCAAGAACAGCGGTTACCGCTTTATTAGTGAGCTCGAACAGCTTTACCAACAGCAAGAAGCATATCAAATACCTGGGGTCGAGGTTGAGGTTGGATCTCAAGAGAGTAAGCAGCTGCCGGAAAAGCCGACTGAGGAAAAACACGGGAAGATGGATCACGCATTAGCAGACGGCTCAGGAAATGACGCATCATTGACCAAAAAATGTGAGGAAACTGTGAAAATGGTGGGGGCATCAAAGGGCAAGAAGAGAAAGAGGCACGATAAATTTGAGATTTTGAAGGGTTTTTGTGAGAACGTCGTGAACAAAATGATGGCAAAGCAAGAACACATGCACAATAAGCTGCTGGAGGACATGTTTAAAAGAGACCAAGAGATATTCGAGAGAGGGGAAGCTTTGAAGAAACAGGAGATAGATAGGATGAACAGGGAGCTCGAAATTATGGCTAAAGAGCAGGCTGTTGCCGGCCAAAGGCAAGCCGCCATTATTGATTTGTTGAAGAAAATTTCAGACCAGAGCCATTTTAACAAAACAGTATCAGACGATCCCAATCCAAATTCTCTGCCTGCTTCTTCCCCGTCGAACTCACAAAACCCTAACCCATGCTGTAATTATACCGGGGAGAACAATCCGGAGCCGCCGCCACGAGTGGTTCTTAATTGTACAAGCGAAGGTGCGTCAGATCAAAACCCTTATAGCTCAAGCCAAGTTCCCAATCCTTCTTCAATTGCTTTTGCTCCAGCACTTACACAGAACCCTAATTCCGTCATTGCCCAGACAAATGGACTGCCCGAAAAAACAGCTTCGACGCATAAAGGCGGGTCGGATAATAATTCTACATGGAGAGAGAAAGAAGAGGTGGGAAGAAGGTGGCCAAGGGAGGAAGTGGTGGCGCTGATAAACCTGAGATGCAGTGCGAATGAAGAGAGAGAAGGAGGGAACAGCAGGGTTCCTCTGTGGGAGAGAATATCTGAAGGGATGAGGGACATGGGGTACAAGAGAAGCGCCAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAATACTTCAGAAAGACGAAGCATCTGAGCAAGAAAAGGTCGGTGGATTCTAGAACCTGTCCCTACTTCCATCAGCTCACTTCTTTGTATTCTCAAGGAATGCTTCATCAGCTTCATGATAATCGCCCCTCCCACTCTTCTCAAACTTAG	1632	0.4651	MFDGVPEQFHQFIAPRNSLPLQLSFPTFDAYNPSPHHLPLPPPPPPPNLFSPLHHKDEQHEQPETSMNLQINEREPQIGEHELIDSSWTDDEVLALLRIRSSLDAWFPELTWEHVSRKLAELGFKRSADKCKEKFEEETSYFNNIHYTKNSGYRFISELEQLYQQQEAYQIPGVEVEVGSQESKQLPEKPTEEKHGKMDHALADGSGNDASLTKKCEETVKMVGASKGKKRKRHDKFEILKGFCENVVNKMMAKQEHMHNKLLEDMFKRDQEIFERGEALKKQEIDRMNRELEIMAKEQAVAGQRQAAIIDLLKKISDQSHFNKTVSDDPNPNSLPASSPSNSQNPNPCCNYTGENNPEPPPRVVLNCTSEGASDQNPYSSSQVPNPSSIAFAPALTQNPNSVIAQTNGLPEKTASTHKGGSDNNSTWREKEEVGRRWPREEVVALINLRCSANEEREGGNSRVPLWERISEGMRDMGYKRSAKRCKEKWENINKYFRKTKHLSKKRSVDSRTCPYFHQLTSLYSQGMLHQLHDNRPSHSSQT	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g0077	543	MobiDBLite	consensus disorder prediction	32	63	-	-
	Lele16g0077	543	MobiDBLite	consensus disorder prediction	178	210	-	-
	Lele16g0077	543	MobiDBLite	consensus disorder prediction	35	51	-	-
	Lele16g0077	543	CDD	GT1	86	145	-	-
	Lele16g0077	543	MobiDBLite	consensus disorder prediction	410	433	-	-
	Lele16g0077	543	Coils	Coil	278	298	-	-
	Lele16g0077	543	Pfam	Myb/SANT-like DNA-binding domain	436	522	IPR044822	-
	Lele16g0077	543	Pfam	Myb/SANT-like DNA-binding domain	86	161	IPR044822	-
	Lele16g0077	543	MobiDBLite	consensus disorder prediction	323	354	-	-
	Lele16g0077	543	ProSiteProfiles	Myb-like domain profile.	80	139	IPR001005	-
	Lele16g0077	543	ProSiteProfiles	Myb-like domain profile.	437	494	IPR001005	-
	Lele16g0077	543	MobiDBLite	consensus disorder prediction	186	202	-	-
	Lele16g0077	543	CDD	GT1	436	501	-	-
	Lele16g0077	543	PANTHER	FI21293P1	55	538	-	-
	Lele16g0077	543	Gene3D	-	88	144	-	-
	Lele16g0077	543	Gene3D	-	438	499	-	-
	Lele16g0077	543	MobiDBLite	consensus disorder prediction	369	393	-	-
	Lele16g0077	543	MobiDBLite	consensus disorder prediction	322	393	-	-
	Lele16g0077	543	FunFam	Trihelix transcription factor GT-2	88	144	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g0077	Lele-ChrLele16	467658	469758	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele16g0077	1	526	Trihelix Transcription Factor Family	AT5G28300	34.790	1.10e-80	263

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Lele16g0077		Myb_DNA-bind_4	2e-18	CL0123