Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0076 ATGATTGAACCATGCCTAATAATGTTGGATTTGCGTCCATTGGTATTTGTGAATCACTATGCTGCAGGCTACAATGCGCATCCTCTTTTAATCATTGACAAAATCATGTCCAGTCAATTAGCAACTCCGGTGCTTGTTGCATGGATTAGAGCAAAATACGAGTTTTGGCGGCTTCAGGCTGTTTCGAGAAAATTGGAGGAAAATTTTATTATCGATCACATGGAGCAGTATGAAGTACTGGAGCAAATTGGAAAAGGTGCTTTTGGCTCCGCTCTCCTTGTGCGGCATAAGCATGAGAAAAAAAAATACGTGCTGAAGAAAATTCGCCTTGCTCGCCAAACTGAGCGGTCTCGTAGATCTGCACATCAGGAGATGGAGCTAATCTCTAAATTAAGAAATCCATTTATTGTTGAGTATAAAGATTCCTGGGTAGAAAAGGGGTGCTATGTGTGCATTATTATAGGTTATTGTGGGGGCGGAGATATGGCAGAAGCTATAAAGAAGGCCAATGGTGTTTTTTTCCCTGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCCCTTAACTACTTACACCTGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGATGAAAGATCAAGACATACGCCTCGGTGATTTTGGACTTGCCAAAATATTGACTTCAGATGATCTTGCTTCCTCTGTTGTCGGAACTCCTAGTTACATGTGCCCTGAGCTCTTGGCTGATATTCCTTATGGTTTTAAATCGGATATTTGGTCCTTGGGATGCTGTATATATGAAATGGCAGCTCATAAGCCTGCATTTAAAGCATTTGATATACAGGCACTAATCAACAAGATTAACAAGTCTATAGTGGCTCCACTGCCAACAAAGTATTCTGGTGCATTTCGGAGTCTTGTCAAAAGCATGCTGCGGAAAAATCCTGAGCTTAGACCTAGTGCCGCAGAGCTGCTTGGACACCGGCATCTTCAACCTTACGTTCACAAGATCCATCTAAAGCTTAATAGCCCCAGGCGAAGTACATTACCAGTTCGTTGGTCAGAATCCAACTACATGAAGAAAACTAGATTTCTTGAGTCAGAAGATGATCCTGTTTCAATATACAGAGATAAGCGACATTCTTTTAGCAATGATCTGACTTTTAATCCTAGCATATCTGGAGCTGAGCAAGACTCTGTTTGTTCTACCCTAGAAATAGATTGTGCTCCGGATCATTTGAATCAACGTTTGGCAGAGCTATGTATTGGAGATAGCCTCGAGGTGAAGTCAGTCTGTAAGCCTGTTGTTTCAAGGACATCTAGTCTCACCAAGACTCCAAGACATACCTCCATAAAGGCTTCTGCCACCTCTAAGAAATCAATGGAACCCAAAAAAAAGCGTGTGTCGCTTCCTACTCCACGCAAAGCCAGACAATCAGTTTGTACAACTCGCAGAGCATCATTTCTATTGCATTCAAGAAGTTCTGATCAACACTCTCGTCATGGGCCTGGTATTGGTTTACTTAGCCATATAGAGTCTCCAGACATTTCAGTAAACTCTCCTAGAATTGATAAGATAGCTGAATTCCCACTAGCGTCATATGAGGAACCACTTTTTCCCATCTATAGAACTCCAACCTCAGCCAAGGGTTCCTCAGGCTCCACACCTTGTGGTGATCGTTCAATCATGAAAGATAAATGCACAGTTCAGATATGTGATAGAGCCTCTGTCAAGCATCGATTGACAGATTCATGGCAGGGAATCAAGCTAAACACGTTTCGGGAAAATGCTGAGGATAAAAGTGGCTCCTCTGATCAAAATGCAACTGCTGGAGCATCAAGCCGTGCCTCTTCAGACACATGCCGCCGGCAGTTTGACACTTCATCATTCCAACAAAGGGCTGAAGCATTGGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAGCATGAAAGGTATGAGGAACTAGGGGTTTTATTGAAACCATTTGGACCGGGGAAGGTCTCTCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAACACTCTCAACCGTGAAGAATCCCTATAA 2082 0.4246 MIEPCLIMLDLRPLVFVNHYAAGYNAHPLLIIDKIMSSQLATPVLVAWIRAKYEFWRLQAVSRKLEENFIIDHMEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCGGGDMAEAIKKANGVFFPEEKLCKWLVQLLMALNYLHLNHILHRDVKCSNIFLMKDQDIRLGDFGLAKILTSDDLASSVVGTPSYMCPELLADIPYGFKSDIWSLGCCIYEMAAHKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRSLVKSMLRKNPELRPSAAELLGHRHLQPYVHKIHLKLNSPRRSTLPVRWSESNYMKKTRFLESEDDPVSIYRDKRHSFSNDLTFNPSISGAEQDSVCSTLEIDCAPDHLNQRLAELCIGDSLEVKSVCKPVVSRTSSLTKTPRHTSIKASATSKKSMEPKKKRVSLPTPRKARQSVCTTRRASFLLHSRSSDQHSRHGPGIGLLSHIESPDISVNSPRIDKIAEFPLASYEEPLFPIYRTPTSAKGSSGSTPCGDRSIMKDKCTVQICDRASVKHRLTDSWQGIKLNTFRENAEDKSGSSDQNATAGASSRASSDTCRRQFDTSSFQQRAEALEGLLEFSARLLQHERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTLNREESL 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0076 693 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Lele16g0076 693 MobiDBLite consensus disorder prediction 603 622 - -
Lele16g0076 693 MobiDBLite consensus disorder prediction 438 458 - -
Lele16g0076 693 ProSiteProfiles Protein kinase domain profile. 77 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0076 693 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 74 643 - -
Lele16g0076 693 Gene3D Transferase(Phosphotransferase) domain 1 159 384 - -
Lele16g0076 693 FunFam Serine/threonine-protein kinase Nek3 159 405 - -
Lele16g0076 693 SMART serkin_6 77 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0076 693 MobiDBLite consensus disorder prediction 597 622 - -
Lele16g0076 693 Pfam Protein kinase domain 77 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0076 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Lele16g0076 693 MobiDBLite consensus disorder prediction 438 482 - -
Lele16g0076 693 SUPERFAMILY Protein kinase-like (PK-like) 74 378 IPR011009 -
Lele16g0076 693 CDD STKc_Nek 76 326 - -
Lele16g0076 693 Gene3D Phosphorylase Kinase; domain 1 57 156 - -
Lele16g0076 693 FunFam Serine/threonine-protein kinase Nek2 74 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0076 Lele-ChrLele16 457972 465597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0076 83 362 MAP Kinase Kinase Kinase AT1G53570 30.667 1.52e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele16g0076 Pkinase 7.2e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2334 13 29189336 29192718 Lele16g0076 16 457972 465597 CCT
Lele14g2264 14 27534499 27538026 Lele16g0076 16 457972 465597 CCT
Lele15g0081 15 480132 484167 Lele16g0076 16 457972 465597 CCT
Lele16g0088 16 521993 525559 Lele16g0076 16 457972 465597 CCT
Lele16g0076 16 457972 465597 Lele16g0076 16 457972 465597 ECH
Lele13g2344 13 29251438 29260483 Lele16g0076 16 457972 465597 hybridization
Lele14g2276 14 27593829 27598439 Lele16g0076 16 457972 465597 hybridization