Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0059 ATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCTTACTACCCCAGCAACGTCACCACGGATCACATTCAACAGTACTTGGACGAGAACAAGTCCTTAATTTTGAAGATTGTGGAAAGCCAAAATTCTGGCAAATTGAGCGAGTGTGCGGAGAACCAAGCGAGGCTGCAGAGAAACCTCATGTACCTAGCTGCAATCGCTGATTCTCAACCTCAGCTACCTACCATGCCTGGTCAGTACCCAAGTGGTGGGGGGATAATGCAGCAGGCAACGCAGTACATGCAGGGCCAGCAAGCTCAGCAAATGACGCAGCAACAACTAATGGCGGCTCGGTCCTCGCTCTTGTATGCCCAACAGCCCCCCTACTCTGCACTTCAACAACAGCAAGCCTTGCAGAGCCAACTGGGTATGAGTTCAGGTGCAGCTCCTCCAGGCCTTCACATGTTGCAATCTGAAGCAACATCTGCATTTCCTGAGTTTGTTCGCGCCGCGAAGCCTGATATTGGCACTTCGGCTGCCGAAGGCCGAGGCGAAGGCGGTGAAACCCTCTACCTCAAACCTTGCAACGATGGCAACTAG 585 0.5316 MQQHLMQMQPMMAAYYPSNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQLPTMPGQYPSGGGIMQQATQYMQGQQAQQMTQQQLMAARSSLLYAQQPPYSALQQQQALQSQLGMSSGAAPPGLHMLQSEATSAFPEFVRAAKPDIGTSAAEGRGEGGETLYLKPCNDGN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0059 194 Pfam SSXT protein (N-terminal region) 19 74 IPR007726 -
Lele16g0059 194 PANTHER SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN 1 157 IPR044779 GO:0003713
Lele16g0059 194 MobiDBLite consensus disorder prediction 171 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0059 Lele-ChrLele16 375731 378113 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2358 13 29319269 29324212 Lele16g0059 16 375731 378113 CCT
Lele14g2290 14 27655012 27659773 Lele16g0059 16 375731 378113 CCT
Lele15g0060 15 358037 363837 Lele16g0059 16 375731 378113 CCT
Lele16g0064 16 399884 401718 Lele16g0059 16 375731 378113 CCT
Lele16g0059 16 375731 378113 Lele13g2368 13 29372247 29372995 CCT
Lele16g0059 16 375731 378113 Lele14g2297 14 27700061 27710881 CCT
Lele16g0059 16 375731 378113 Lele15g0052 15 314036 318275 CCT
Lele16g0059 16 375731 378113 Lele16g0054 16 349118 355066 CCT
Lele13g2357 13 29315182 29317749 Lele16g0059 16 375731 378113 CCT
Lele14g2289 14 27651189 27653756 Lele16g0059 16 375731 378113 CCT
Lele15g0062 15 365122 367689 Lele16g0059 16 375731 378113 CCT
Lele16g0065 16 402989 405556 Lele16g0059 16 375731 378113 CCT
Lele13g2362 13 29337815 29340987 Lele16g0059 16 375731 378113 hybridization
Lele14g2293 14 27671211 27673602 Lele16g0059 16 375731 378113 hybridization