Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0054 ATGGAGATCCGCCTCCTCATGCTCGCTTTCTTGCTCCTTCTTCCATCTGCCCTCCCTGTTTCCGATTACACCTCATTTGTATACAAAGCTTGTGCTCCCCAAAACCTATCTCACTCCCAAACACCGCCATCCCTCCTGGCAAAGCTGGCAGACCAATCGTGGTATTCGAGCTTCTTCAGGAGCACCGAGATTGCGGGCATGACGGGGGTGTTCCAGTGCAGGGAGGACATGGGCGGAGACGAATGTGGGAGGTGCGTGAATTTGGCGGCCCAGATGTGCGAATGGGCGTGTGGCCAATCGGCGGCGGGGGCGCGGGTGCAGCTGGAGGGGTGCTACGCGCAGTACGAGATGGAGGAATGGGAAACAGGGGAAGTGCTTTACAGGGAATGCGGGGAAGCGAATGGGAATGAGGTGATGATGGAATTGGAGGGAGTGGTGGAGAAGAGAGTGATGAGCATGGACATTGTGAGGCGTGGATACTACAGAGGGAATTACGATTCAGTGGAAATGATGGGACAGTGCGAAGCTGATTTAGACGAGTGTGAGTGCCGGGCATGCTTCGGCCATGCCCTCCAGGTCGCTGCCCACCAATGCTCTGCTTCTCTCTCTGCCCGAATTTATCTCCCCTCCTGTTTTCTCGCTTATTCATACCATCCCATCCGCTCATTCCCCTCAGGAGGAGTAAATAATAGCAGCAGCAGCAGCGCCAAGAGAATAGCAGCCATAGCGGTTGGAGGGGGTGTGGCCGTCTGTTTGGCTTTATTGCTCTTAAAATCAAATTCTGAGAAAGAAGATTCTGCAAGCCATGGGGAAGAACCTGTTGATGAGTCTAGCTCTGCTCCTATTCAAAGAGAAAATCTACCAAATGGACATTATGGGAAAGAGATAATGAATCCAAAAGCTATACACAATAAGTTACATCTTGGATCCAGTTCAACAAGTTGCACTGGTATTGTTGCGGATCCATCTGAGGTTTTGACTAGAGATTATCGTGTCTCTGATCTGTATCTGGACCTGAACAGTGTCATCAATGATTCTACACATAATAACAACCCCACAAGCAGCAAGGCTAATATTGACATTGCCTCTTCAATATTGGGAGAAGTGAAGATTTCCTTAAACTGTGACAGCGCACTTGGACAACCCAACTTCAACATTCCAAACTTGAATGATGTTATGAAGTTCATGGAGAAGTACCTTGAGCAAAGCAATATTGCTGGACCCGAATTTTCTATGGTGAATTTATTAAACAATTTGTGTGAGAATTTCTTTAACAATGCAAACAGATTAACAAATGGCCCACAACAAGCCTTTACTCAAGATGAGAGGAAGCTATTTCAGTTTCTTAGTGACATAACAAAAGGCTCAGAAAATGTGAAGATATCATTGATAGATGAGCATGGTAATGGGGAATTGCCAAAGTTTAATTACATACCACATAATCTAATATATCAGAGTGCTAATGTGAATATTTCAATGGCTCGTATTGCGGATGAATGTTGCTGCTCAAATTGTTTAGGAGACTGTCTTTCTCAATCATTACCTTGTGCATGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACGTTGCATGGCTTGTTGAAGGACGAATTTCTAACGTCCTGCATGTCAATGAAAAAGGAACCTCAAGCTCATGAATTGGTGTACTGTCAAGAGTGCCCATTAGAGAGGTCTAAGAATGAATGCATGGCTGAGCAATGCAAGGGGCACCTGATTAGGAAGTTCATTAAGGAATGTTGGAGGAAATGTGGATGTGACATGGAGTGTGGAAATCGTATAGTGTTCTTTACTGGAGAAGGAAAGGACTGGGGCTTGAGAACACTGGAAGATTTGCCTAGGGGGTCCTTTGTATGTGAATATGTTGGCGAAATATTAACCAACACGGAGCTGTATGAAAGATTTGTGAACAAAAATGGAAATGATAAGCATACATATCCTGTAACCCTTGATGCAGACTGGGGCTCAGAAAGGGTGTTAAAGGACGAGGAGGCACTATGTCTTGATGCAACATATAATGGAAATGTTGCCAGGAAAGTGAGTGCTTATGAGGAGTTGACGTGGGATTATGGTATTGACTTTGATGATCATGATCACCCTGTCAAAGCATTCAAATGTTGTTGTGGGAGCTCATTCTGTCGTGATAAGAAGCGGAAAGGTGTAGATGATGCCATCCTTGTCGAGGTCGAAGAAAGCGGCATGCTGCTGAAGCACAGACATGTTATTATGGCTGTGGCCCCCGGTGCCATTGACGTTCTCTGA 2280 0.4566 MEIRLLMLAFLLLLPSALPVSDYTSFVYKACAPQNLSHSQTPPSLLAKLADQSWYSSFFRSTEIAGMTGVFQCREDMGGDECGRCVNLAAQMCEWACGQSAAGARVQLEGCYAQYEMEEWETGEVLYRECGEANGNEVMMELEGVVEKRVMSMDIVRRGYYRGNYDSVEMMGQCEADLDECECRACFGHALQVAAHQCSASLSARIYLPSCFLAYSYHPIRSFPSGGVNNSSSSSAKRIAAIAVGGGVAVCLALLLLKSNSEKEDSASHGEEPVDESSSAPIQRENLPNGHYGKEIMNPKAIHNKLHLGSSSTSCTGIVADPSEVLTRDYRVSDLYLDLNSVINDSTHNNNPTSSKANIDIASSILGEVKISLNCDSALGQPNFNIPNLNDVMKFMEKYLEQSNIAGPEFSMVNLLNNLCENFFNNANRLTNGPQQAFTQDERKLFQFLSDITKGSENVKISLIDEHGNGELPKFNYIPHNLIYQSANVNISMARIADECCCSNCLGDCLSQSLPCACAQETGGEFAYTLHGLLKDEFLTSCMSMKKEPQAHELVYCQECPLERSKNECMAEQCKGHLIRKFIKECWRKCGCDMECGNRIVFFTGEGKDWGLRTLEDLPRGSFVCEYVGEILTNTELYERFVNKNGNDKHTYPVTLDADWGSERVLKDEEALCLDATYNGNVARKVSAYEELTWDYGIDFDDHDHPVKAFKCCCGSSFCRDKKRKGVDDAILVEVEESGMLLKHRHVIMAVAPGAIDVL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0054 759 Pfam SET domain 610 686 IPR001214 GO:0005515
Lele16g0054 759 SMART preset_2 449 591 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele16g0054 759 Pfam Salt stress response/antifungal 164 216 IPR002902 -
Lele16g0054 759 Pfam Salt stress response/antifungal 44 116 IPR002902 -
Lele16g0054 759 Gene3D SET domain 686 722 IPR046341 -
Lele16g0054 759 ProSiteProfiles SET domain profile. 598 697 IPR001214 GO:0005515
Lele16g0054 759 MobiDBLite consensus disorder prediction 263 294 - -
Lele16g0054 759 Gene3D SET domain 452 685 IPR046341 -
Lele16g0054 759 Gene3D - 23 120 IPR038408 -
Lele16g0054 759 Gene3D - 134 219 IPR038408 -
Lele16g0054 759 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 684 726 - -
Lele16g0054 759 Pfam Pre-SET motif 452 599 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele16g0054 759 SUPERFAMILY SET domain 459 720 IPR046341 -
Lele16g0054 759 ProSiteProfiles Gnk2-homologous domain profile. 113 220 IPR002902 -
Lele16g0054 759 SMART set_7 598 703 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0054 Lele-ChrLele16 349118 355066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0054 583 687 C2H2 Transcription Factor Family AT2G23740 36.522 2.17e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele16g0054 Pre-SET 8.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2362 13 29337815 29340987 Lele16g0054 16 349118 355066 CCT
Lele14g2293 14 27671211 27673602 Lele16g0054 16 349118 355066 CCT
Lele15g0057 15 343452 345849 Lele16g0054 16 349118 355066 CCT
Lele16g0059 16 375731 378113 Lele16g0054 16 349118 355066 CCT
Lele16g0054 16 349118 355066 Lele05g1349 05 8470778 8475811 CCT
Lele16g0054 16 349118 355066 Lele06g1211 06 7609311 7617306 CCT
Lele16g0054 16 349118 355066 Lele07g1407 07 8545899 8550525 CCT
Lele16g0054 16 349118 355066 Lele08g1205 08 7602111 7606901 CCT
Lele16g0054 16 349118 355066 Lele16g0054 16 349118 355066 ECH
Lele13g2368 13 29372247 29372995 Lele16g0054 16 349118 355066 hybridization
Lele14g2297 14 27700061 27710881 Lele16g0054 16 349118 355066 hybridization