Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0053 ATGATTGAAGAGTTTGGTCAGCTGGTTCTGACTTCTCATATATCTTCACTTGTCAGTTTGTGGCCTGTTGATCTTTTGATGGCAAATAGTACGTGACAAGTTAATGACACCCGCAGATTCTTTCAGCTACCCACCATCCAAGATCTGACTGCAAATCCTGCCATAGAAAGCGATGAAATTTCCTGGGGACTAGATCCACTTCAGGATATTCTTGGTTTTCCTGGAATTGTTTCTGTCCAGAACGATCAGTTGGAAAATAGTTCTTGTTGCATGCCTAATGACAATACTAAAAAAACTGATCTAGTGGAATGGGTTGATCATTTAATATCGGTTGATGATTCTCTACACCCAAATTGGAGTCAGCTTCTTGGTTGTGATGATGTAACAGATTCAAAATCAAAGGAGTGCCAGGTTCCCGGCAGCAGCATGTACCATCTGAAGAAATTAATGCCCTTAATAATTCGGTGTCAACGGCACCACAAACTAAGCCAAGAATGCGTTGGACTCCAGAACTTCATAAGTCCTTCGTGGAAGCAGTTAATCAACTTGGTGGCAGTGAGAGTATGTTTTCTTCTATGTGCTGTTGTACTTCTTGATCTTCACGCTGGCAGAGTTACTTCAGGTCAGCACTTCATTTCATTATGTTATCATGCAGAGGCTACTCCTAAGGGTGTCTTGAACCTGATGAAAGTCGAGGGCCTTACCATCAATCATGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAGTCATCCGGAGGAACTTCCGAGAAAAAGTTGACATCAATTGAAGAAATGAAATCCCTAGACCTGAAAACAATCATCGATGCTAAGGAGCATGCATTTTACTTTGGTTACAGGAGTATGGGGATCACTGAAACTCTGCGGTTGCAAATGGAATTACAAAAACGACTTCATGAACAACTTGAGATTGAGGACCAAGGCAAGCGTCTTCATATCATGTTTGAGAGACAAAAAGAAATGGAGAATGGCAAGCTCAAGGGCTCCTCCTCCATGGATGAGCCTTCTGCTCCCTTATCAAACAAGGTTGAAAATTCAGAAATGTCAAATGAGGAACATGACAAATCGGGAACTTCCCAGGGTGGAAGCACAAAGCTAAAAGCAGATGACAATATGTTTGAACAGGAGCTGGGAGAAGATCGGTTTGAGGGACCCCCCACAAAACGTGTAAAGAGTTGA 1212 0.4233 MIEEFGQLVLTSHISSLVSLWPVDLLMANSTXQVNDTRRFFQLPTIQDLTANPAIESDEISWGLDPLQDILGFPGIVSVQNDQLENSSCCMPNDNTKKTDLVEWVDHLISVDDSLHPNWSQLLGCDDVTDSKSKECQVPGSSMYHLKKLMPLIIRCQRHHKLSQECVGLQNFISPSWKQLINLVAVRVCFLLCAVVLLDLHAGRVTSGQHFISLCYHAEATPKGVLNLMKVEGLTINHVKSHLQKYRTARYKPESSGGTSEKKLTSIEEMKSLDLKTIIDAKEHAFYFGYRSMGITETLRLQMELQKRLHEQLEIEDQGKRLHIMFERQKEMENGKLKGSSSMDEPSAPLSNKVENSEMSNEEHDKSGTSQGGSTKLKADDNMFEQELGEDRFEGPPTKRVKS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0053 403 Pfam MYB-CC type transfactor, LHEQLE motif 293 331 IPR025756 -
Lele16g0053 403 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 217 248 IPR006447 GO:0003677
Lele16g0053 403 Gene3D - 183 252 - -
Lele16g0053 403 MobiDBLite consensus disorder prediction 380 403 - -
Lele16g0053 403 MobiDBLite consensus disorder prediction 340 356 - -
Lele16g0053 403 MobiDBLite consensus disorder prediction 326 403 - -
Lele16g0053 403 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 219 366 IPR044848 GO:0003700
Lele16g0053 403 SUPERFAMILY Homeodomain-like 215 248 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0053 Lele-ChrLele16 342015 345631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0053 60 370 G2-like Transcription Factor Family AT3G04450 37.425 1.20e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele16g0053 Myb_CC_LHEQLE 1.4e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0053 16 342015 345631 Lele13g1917 13 26836517 26837320 CCT
Lele16g0053 16 342015 345631 Lele14g1852 14 25178068 25179743 CCT
Lele16g0053 16 342015 345631 Lele15g0490 15 2881857 2882666 CCT
Lele16g0053 16 342015 345631 Lele16g0513 16 2832267 2833913 CCT
Lele15g0050 15 302939 306946 Lele16g0053 16 342015 345631 ECH
Lele16g0053 16 342015 345631 Lele16g0053 16 342015 345631 ECH
Lele13g2370 13 29378333 29380617 Lele16g0053 16 342015 345631 hybridization
Lele14g2298 14 27711289 27713573 Lele16g0053 16 342015 345631 hybridization