Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0049 ATGAGGATTATGATAAAGGGTGGTGTTTGGAAAAACACCGAGGATGAAATCCTCAAAGCAGCTGTCATGAAATATGGTAAAAACCAGTGGGCTCGAATCTCTTCGCTTCTGGTTCGCAAATCCGCCAAGCAATGTAAGGCTCGATGGTACGAGTGGCTTGATCCTTCCATTAAAAAGACTGAATGGACAAGAGAAGAGGATGAAAAGCTTCTTCATCTTGCTAAGCTTATGCCCACACAGTGGAGAACAATTGCTCCAATTGTAGGCCGTACCCCTTCCCAGTGCCTTGAACGGTATGAGAAACTCCTTGATGCAGCCTGTGTAAAGGATGAGAACTATGAACCTGGTGATGACCCACGGAAATTGCGACCTGGTGAGATTGACCCAAACCCTGAGTCAAAACCTGCACGACCAGATCCTGTTGATATGGATGAGGATGAGAAGGAAATGTTGTCTGAAGCACGAGCAAGGTTAGCCAACACCAAGGGTAAGAAGGCAAAACGGAAAGCCAGGGAGAAACAACTAGAAGAAGCCAGGAGGCTTGCCTCTTTACAAAAGAAGAGAGAATTGAAGGCTGCTGGAATTGATATCAGGCAGCGGAGGAGGAAAAGGAAAGGAATAGACTACAATGCAGAAATCCCATTTGAGAAAAGGCCTCCTCCAGGGTTTTTTGATGTTACTGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTCGAGGGAAAAAGAAGGATTGATGTGGAAGCACAGTTAAGAAAGCAAGACATTGCAAAGAATAAGATTGCACAAAGGCAAGATGCCCCCTCTGCTATACTGCATGCCAACAAGCTCAATGACCCAGAAACAGTTAGAAAAAGGTCAAAATTGATGCTTCCACCACCCCAAATTTCTGATCATGAATTAGAAGAAATTGCAAAGATGGGTTATGCTAGTGACCTTGTGGGGAGTGAGGAAATTGCTGAAGGTAGTGGTGCAACACGTGCTCTTCTGGCTAATTATGCTCATGCCCCTAGCCAGGGAATGACTCCTTTGCGAACTCCTCAAAGAACACCAGCTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTGGCAAGGTTGAGGGAGTCTCAGACACCATTGTTGGGAGGAGATAACCCGGAGTTGCATCCTTCAGACTTTTCTGGGGTCACTCCTAAGAAAAAAGAAATTCAGACTCCGAACCCTATGTTGACTCCTTCTGCAACGCCTGGAGGTGCAGGCCTCACCCCTAGAAGTGGTATGACACCAGCAAGGGATGGCTTTTCTTTTGGCATGACTCCTAAGGGAACTCCTCTTAGAGATGAGCTTCATATCAATGAAGACATGGATATGCATGAGAGCACAAAACTTGAGCTACGTAGACAAGCTGATCTCACAAGAAGCTTGCGCTCTGGTTTAGGCAGTCTTCCACAGCCAAAAAATGAGTACCAGATAGTTATGCAGCCTGCTCCAGAAGATGTTGAAGAACCTGAGGAAAAGATTGAAGAGGATATGTCTGACAGAATAGCTCGGGAAAAAGCTGAAGAAGAAGCTCGGCAACAAGCATTACTTAGAAAACGATCAAAGGTCCTTCAAAGGGAGCTTCCTAGGCCTCCTGCTGCATCATTGGATCTGATAAGAAATTCTTTGATTATTGCTGATGGGGATAAGAGTTCCTTTGTTCCTCCTACTTCTATTGAGCAAGCTGATGAGATGATAAGAAAGGAGCTTCTAAGCTTACTGGAACATGACAATGCCAAGTACCCACTTGATGAGAAAGTTAATGAGAGGAAAAAAAGAGTCAAGCGTGCTGCAACTGGATCAGCTGTTGTCCCTCTGATTGAAGATTTTGAGGAAGATGAAATGAAAGATGCTGATCAGTTGATAAAGGAGGAAGCTCAGTATCTTCGTGTAGCAATGGGACATGAAAGTGAACCCCTTGATGAATTTGTTGAAGCACATAGAACTTGCCTTAATGATCTTATGTACTTCCCTACCCGTAATGCCTATGGTCTCTCAAGTGTTGCTGGAAACATGGAGAAGCTTGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAAAAAGTTGGATGATGGCAAGGAGAAGGCAGTACGCCTTGAGAAGAAGGTGATGGTTCTTACACAAGGCTATGAGATGAGGGCAAAGAAAAGTCTTTGGCCACAAATCGAAGCCACATTCAAGCAGATGGACGCTGCTGCAACAGAACTAGAGTGCTTCCAAGTTTTGCAAAAGCAGGAGCAGCTAGCAGCATCGCATCGGGTAAACAATATATGGGCTGAAGTGGAGAAGCAAAAGGAACTTGAGAAAACCTTGCAACAGAGATACGGGGATCTTCTGGCAGAAGTGGAAAGGATTCAAAACATTATGAAACAATACAGGGCGCATTCTAACCAGCAAGAAGAAGCTGCTGCTGAGAAGCGTTCTTTTGAGTCGGCTGAGACATCTGATGAAACGAGGATGCAGGGTATAGGGAATCATGAAAGTATATCCCACTCGAATGAGCATGGAAGTTCTAAGTCAGTTAATTCAACACATGATGAAACTTCGGTACAGCTACAAGCCGAGGCCACACCCGGCCTCAAAAACGATATGGATGCGGATTCTGATAAAGAGCAAATGACACGCGATGCTGATGTCAAACTACAAGATGTGACACCCGTTGCAGAGGAGGGGGTCAGTGCAACTGTAGTACCAGATAAGAGCATCGATAGTTATATTGCCGACAGGGAGACCACTCTAGACACGGGTGCTCCAGAGGATACAAGTATTGAGAGATGTGGGGGGGATCCAGATTTGAAGAATCCAGATAATGTGGCCATAGGCTCACATGATGGCAAAATACCTGAAACCCCTGATCTGGATTAG 2907 0.4499 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRKGIDYNAEIPFEKRPPPGFFDVTDEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDHELEEIAKMGYASDLVGSEEIAEGSGATRALLANYAHAPSQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPKKKEIQTPNPMLTPSATPGGAGLTPRSGMTPARDGFSFGMTPKGTPLRDELHINEDMDMHESTKLELRRQADLTRSLRSGLGSLPQPKNEYQIVMQPAPEDVEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLDLIRNSLIIADGDKSSFVPPTSIEQADEMIRKELLSLLEHDNAKYPLDEKVNERKKRVKRAATGSAVVPLIEDFEEDEMKDADQLIKEEAQYLRVAMGHESEPLDEFVEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRKKLDDGKEKAVRLEKKVMVLTQGYEMRAKKSLWPQIEATFKQMDAAATELECFQVLQKQEQLAASHRVNNIWAEVEKQKELEKTLQQRYGDLLAEVERIQNIMKQYRAHSNQQEEAAAEKRSFESAETSDETRMQGIGNHESISHSNEHGSSKSVNSTHDETSVQLQAEATPGLKNDMDADSDKEQMTRDADVKLQDVTPVAEEGVSATVVPDKSIDSYIADRETTLDTGAPEDTSIERCGGDPDLKNPDNVAIGSHDGKIPETPDLD 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0049 968 Coils Coil 167 187 - -
Lele16g0049 968 MobiDBLite consensus disorder prediction 876 892 - -
Lele16g0049 968 MobiDBLite consensus disorder prediction 213 234 - -
Lele16g0049 968 Pfam pre-mRNA splicing factor component 406 654 IPR021786 -
Lele16g0049 968 SMART sant 58 105 IPR001005 -
Lele16g0049 968 SMART sant 6 55 IPR001005 -
Lele16g0049 968 FunFam CDC5 cell division cycle 5-like 5 59 - -
Lele16g0049 968 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Lele16g0049 968 MobiDBLite consensus disorder prediction 924 968 - -
Lele16g0049 968 CDD SANT 10 53 IPR001005 -
Lele16g0049 968 Gene3D - 5 59 - -
Lele16g0049 968 MobiDBLite consensus disorder prediction 113 150 - -
Lele16g0049 968 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Lele16g0049 968 Pfam Myb-like DNA-binding domain 10 70 - -
Lele16g0049 968 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 803 - -
Lele16g0049 968 MobiDBLite consensus disorder prediction 829 870 - -
Lele16g0049 968 MobiDBLite consensus disorder prediction 157 176 - -
Lele16g0049 968 CDD SANT_CDC5_II 55 106 - -
Lele16g0049 968 FunFam CDC5 cell division cycle 5-like 60 120 - -
Lele16g0049 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Lele16g0049 968 Coils Coil 799 819 - -
Lele16g0049 968 Coils Coil 682 716 - -
Lele16g0049 968 Gene3D - 60 114 - -
Lele16g0049 968 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Lele16g0049 968 MobiDBLite consensus disorder prediction 399 413 - -
Lele16g0049 968 MobiDBLite consensus disorder prediction 810 900 - -
Lele16g0049 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Lele16g0049 968 MobiDBLite consensus disorder prediction 813 828 - -
Lele16g0049 968 MobiDBLite consensus disorder prediction 379 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0049 Lele-ChrLele16 325399 329787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0049 1 815 MYB-Related Transcription Factor Family AT1G09770 77.451 0.0 1249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele16g0049 Myb_Cef 6.9e-60 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2373 13 29387756 29392275 Lele16g0049 16 325399 329787 hybridization
Lele14g2302 14 27725658 27730052 Lele16g0049 16 325399 329787 hybridization