Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0042 ATGTGTGAGCAGCTCCAAGCACAGTACCAGTTGTGCCAAGAGATCGGTCGCGGTCGGTTCGGCGCCGTCTTCCGCTGCTTCCATCCCGCCTCCAACCACTTCTTCGCCTGCAAAGTCATCGACAAGCGCCTCCTCACCGATCCCCTCGATCGCGACTGCCTCCAGAATGAACCCAAGTACCTGGCCCTCCTCTCCCCCCACCCTTACATTCTTCAGATTTTTGACGTCTTCGAGAACGATGATTCCCTCTCCGTCGTCCTCGAGCTCTGCGAGCCCCTCACCCTCCTCGACCGCATCATCGATCGCTCCTTGCTCGAGACTGAGGCCGCTTCCGTCATGAAGCAGCTCCTCGAAGCTGTTGCGCATTGCCATCGCCTCGGCATAGCCCACAGGGACATCAAACCCGACAATATTTTGTTCGATTCCCGCAATAATCTTAAGGTCGCCGACTTTGGGTCGGCGGAGTGGTTCGGCGACGGAGGGACCATGACCGGTGTGGTCGGGACGCCGCATTATGTGGCTCCGGAGGTGCTGTTGGGTAGACAGTACAACGAGAAGGTAGATATGTGGAGCAGCGGAGTGATATTGTACATAATGTTGTCGGGGATTCCGCCCTTTTACGGAGAATCGGCCGAAGAGACCTTTGAGGCTGTGCTGAGGGCTAATCTGAGGTTTCCGTCTAGGGTTTTCATGTCCGTGTCTTCCACTGCTAAGGATCTGATGAGGAAGATGATGTGCAGGGACGCATCCAGGCGATTATCTGCCGAGCAGGCCCTGAGGCACCCTTGGATCCTGAGTGGAGGAGAGGCCACCGATCTGACTTGA 825 0.5673 MCEQLQAQYQLCQEIGRGRFGAVFRCFHPASNHFFACKVIDKRLLTDPLDRDCLQNEPKYLALLSPHPYILQIFDVFENDDSLSVVLELCEPLTLLDRIIDRSLLETEAASVMKQLLEAVAHCHRLGIAHRDIKPDNILFDSRNNLKVADFGSAEWFGDGGTMTGVVGTPHYVAPEVLLGRQYNEKVDMWSSGVILYIMLSGIPPFYGESAEETFEAVLRANLRFPSRVFMSVSSTAKDLMRKMMCRDASRRLSAEQALRHPWILSGGEATDLT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0042 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lele16g0042 274 SUPERFAMILY Protein kinase-like (PK-like) 6 266 IPR011009 -
Lele16g0042 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Lele16g0042 274 CDD STKc_CAMK 8 263 - -
Lele16g0042 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 268 - -
Lele16g0042 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0042 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0042 274 FunFam Phosphoenolpyruvate carboxylase kinase 2 1 274 - -
Lele16g0042 274 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
Lele16g0042 274 Gene3D Transferase(Phosphotransferase) domain 1 94 272 - -
Lele16g0042 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0042 274 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0042 Lele-ChrLele16 283809 284824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0042 3 272 EF-hand Containing Proteins AT3G20410 40.511 2.05e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele16g0042 Pkinase 9.4e-71 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0042 16 283809 284824 Lele16g0042 16 283809 284824 ECH
Lele13g2377 13 29417373 29418362 Lele16g0042 16 283809 284824 hybridization
Lele14g2308 14 27772559 27773573 Lele16g0042 16 283809 284824 hybridization