Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0038 ATGGAAAAAGTCTCAGCCTTTCTTTTGTTGGCTTCTTACATCGTCGTCTCCGTCTCTGCTATCGATAGTGATTATGCGCACTGCAATTGTGACGACGAAGGGCTTTGGAGCATACATAACATTCTAGAGAGCCAAAGAGTTAGTGACTTCTTTATTGCCATAGCATATTTTTCGATCCCCATTGAACTCCTCTACTTTGTTAGCCGCTCCAACCTTCCCTTCAAGTGGGTGTTCATTCAGTTCATTGCATTCATAGTTCTTTGTGGCTTGACGCATTTACTCAATGCATATACTTATTATGGACCGCACTCCTTCCAGTTGGTGCTCTCCCTTACAATTGCTAAACTCCTTACAGCTCTGGTCTCTTGTGCAACTGCAATTACCCTTTTTACTCTGATTCCTCTTCTTCTCAAAATCAAAGTGAGGGAGCTCTTTTTGAAGCAGAACGTGTTGGAATTAGACCAGGAGATTGGGATGATCAAAAGACAAAAAGAAGCAAGCTGGCATGTTCGGATGCTAACACGGGAAATTAGGAAGTCTCTGGATAAGCATACAATCTTGTACACTACCCTTGTTGAGCTTTCGAAATCATTGGACTTGCTTAACTGCGCTGTTTGGATGCCAAATGAGGATGGACGAGAAATGTACTTAACGCATGAGTTGAAAACAAGCTCCCCCGAGATTTTTCGCTATTCTATTCCCATAAACGACCCAGATGTCTTCGAGATAAGAAAAAATAAAGGGGTTAGGATTTTGAGACCTGAATCAGCACTAGGAGCTGCAAGCAAGGGGGGATCTGGGGAGTCAGGTGCTGTTGCAGCTATTCGTATGCCGATGCTTCATGTCTCAAATTTTAAAGGAGGAACACCTGAGTTAGTTGATACATCCTATGCTATTCTGGTTTTGGTTCTTCCAAATTCAAATTCTAGGGCTTGGAGCCACCAAGAGATGGAGATAGTGGAGGTAGTTGCTGATCAGGTCGCTGTAGCCCTGTCTCATGCGTCTGTTCTTGAGGAGTCTCAGCTCATGAGACAGAAACTGGCAGAGCAAAACCGGGCTTTGCAACAGGCTAAAAAGAATGCAATGATGGCTAGTCAGGCAAGGAAATCATTTCAGAAAGTGATGAGTCATGGTATGCGCAGGCCTATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGACAATTTGAGAACTGAGCAAAAGGTTATAGTTGACACAATGATCAAAGTTGGCCATGTTCTCTCAAGTTTGATTAATGATGTAATGGAGATTTCCGTAAATGATAAAGGAAGCTTCCGGTTGGAGATGAAACCTTTCAATTTACTTTTGATGATGAGAGAAGCCGCTTGTATTGCTAAGTGTTTGTGTGTATATAAAGGCTTTGGTTTTAAAATTGAAGTCCAGAAGTCGTTGCCCGATCTGGTGATAGGGGATCAGGCAAGGGCTTTTCAAGTAATTTTGCATATGATTGACTATTTATTGAACATATATGATGGAGAAAGGACTCTCATTTTTCAAGTTTATCTTGAAAACGATAATGTGGATAAGGACGATAATTTTTTGGGAATATGGAGATCAGGCACGCAAAATGATAATGTACATATAAAATTTGATTTTCAGATAACTGGTACAAGTTCACGTTCAGACGAATCAACTTCAACAAGACGCTATGCTGGTGGAAGGCACTATGTCAATGAAACTAATGAGGGCCTAAGCTTCAGAATGTGCAAAACACTGGCACAGATGATGCAAGGGAATATCTGGTTATCGCCAAACGCTCTAGGTTTGGCACAAAGCTTGGCACTTGCTCTCAAGTTTCAGATAGGGGGGCCATATCACAGAAGATCCATTTTAGCACCTAAAGATTCTCTTGACTCTCGGTTCAGAGGGCTCAAGGTTGTGTTAACCGACGACGACGATGTGAACAGGACAGTGACGAAGAAACTTCTTGAGAAGTTGGGTTGTCAAGTGACTGCTGTTTCGTCAGGGTTCGAATGCCTGGGCGCAATAAGCGCATCTGGTAACACATTCAAAGTCATCCTTATGGATCTGCACATGCCTGAAATGGATGGTTTTGATGTGGCTATGAGGATACGGAAGTTCCACAGCCGCAACTGGCCCTTGATTATAGCTCTTACGGCAAGTGCAGAAGAAGATGTGAGGGATAGATGCCTACGGGTTGGAATGAATGGATTAATTCGGAAACCTATTCTTCTCCAAGAGATAGCAGATGAACTTAGAAGAGTCCTGCAACACGCAGGCGAAAATTTGTGA 2280 0.4268 MEKVSAFLLLASYIVVSVSAIDSDYAHCNCDDEGLWSIHNILESQRVSDFFIAIAYFSIPIELLYFVSRSNLPFKWVFIQFIAFIVLCGLTHLLNAYTYYGPHSFQLVLSLTIAKLLTALVSCATAITLFTLIPLLLKIKVRELFLKQNVLELDQEIGMIKRQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKSLDLLNCAVWMPNEDGREMYLTHELKTSSPEIFRYSIPINDPDVFEIRKNKGVRILRPESALGAASKGGSGESGAVAAIRMPMLHVSNFKGGTPELVDTSYAILVLVLPNSNSRAWSHQEMEIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQQAKKNAMMASQARKSFQKVMSHGMRRPMHSILGLLSMFQEDNLRTEQKVIVDTMIKVGHVLSSLINDVMEISVNDKGSFRLEMKPFNLLLMMREAACIAKCLCVYKGFGFKIEVQKSLPDLVIGDQARAFQVILHMIDYLLNIYDGERTLIFQVYLENDNVDKDDNFLGIWRSGTQNDNVHIKFDFQITGTSSRSDESTSTRRYAGGRHYVNETNEGLSFRMCKTLAQMMQGNIWLSPNALGLAQSLALALKFQIGGPYHRRSILAPKDSLDSRFRGLKVVLTDDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAISASGNTFKVILMDLHMPEMDGFDVAMRIRKFHSRNWPLIIALTASAEEDVRDRCLRVGMNGLIRKPILLQEIADELRRVLQHAGENL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0038 759 Gene3D - 633 758 - -
Lele16g0038 759 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Lele16g0038 759 PIRSF Ethylen_sen_hybr_HK 1 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Lele16g0038 759 Gene3D - 332 430 - -
Lele16g0038 759 ProSiteProfiles Response regulatory domain profile. 634 752 IPR001789 GO:0000160
Lele16g0038 759 Coils Coil 337 367 - -
Lele16g0038 759 CDD REC_ETR-like 633 748 - -
Lele16g0038 759 Gene3D - 431 609 IPR036890 -
Lele16g0038 759 Gene3D - 166 331 IPR029016 -
Lele16g0038 759 CDD HATPase_ETR2_ERS2-EIN4-like 473 606 - -
Lele16g0038 759 SMART REC_2 633 748 IPR001789 GO:0000160
Lele16g0038 759 Pfam His Kinase A (phospho-acceptor) domain 369 428 IPR003661 GO:0000155|GO:0007165
Lele16g0038 759 FunFam Ethylene receptor 4 334 428 - -
Lele16g0038 759 FunFam Ethylene receptor 631 755 - -
Lele16g0038 759 SUPERFAMILY CheY-like 630 754 IPR011006 -
Lele16g0038 759 Pfam Response regulator receiver domain 635 747 IPR001789 GO:0000160
Lele16g0038 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 352 432 IPR036097 GO:0000155|GO:0007165
Lele16g0038 759 CDD HisKA 365 427 IPR003661 GO:0000155|GO:0007165
Lele16g0038 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 755 - -
Lele16g0038 759 Pfam GAF domain 184 331 IPR003018 GO:0005515
Lele16g0038 759 SMART gaf_1 182 341 IPR003018 GO:0005515
Lele16g0038 759 SUPERFAMILY GAF domain-like 185 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0038 Lele-ChrLele16 243440 247406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0038 22 757 Miscellaneous Gene Families AT3G04580 63.369 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele16g0038 GAF 2.2e-10 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2382 13 29439965 29443886 Lele16g0038 16 243440 247406 hybridization
Lele14g2312 14 27795639 27799635 Lele16g0038 16 243440 247406 hybridization