Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0037 ATGCCTGTCCCTCATACTATGAACTTGAAGTATTCACCCGAACAATTTATGGGTATTCCCTGTGTGTGTTTTCGTGGATATCAGCAGTCAGGGAATCCATTTAGAGCCAGAACATTGACGGTGGAGACTACATGGACACGAACGGCTGAGATTGTGCTATGCTGTCTCGCTTGTCCGAAAATGTTGAAGCTGTCTCGCTTGTTCGCTTCTAGGCATCAGGTATCAAAAACACTGTTATCTCAGAAAGCTGATATTAGAGACAGTCTATGGCTTCTGTGTGGTTCTACTACCCATTCAGCTGGCATTTCTACTGCTACAAATAATTATTCTGCTAAAGGACACACTTCAAGTCAAATATTTGTTCCATATTCTGTTTTTAAAGGCAAAGCTGCACTCTCCCTGCGTCCCCTACTTCCGACTTTCACCAAGTTGCATTCTGGCACCGTTATAATTGATCGTCGTGGTTCAATGATGATGACTTTCGTACCTGCTTTTGGTGAGCGCAAATATGACTGGGAGAAGAAACAGAGATTTGCTCTCTCAGCAACGGAGGTTGGTTCTTTGATAAGCATGGGCCCCACAGGTTCCTGCGAATTCTTTCATGACCCTGCCATGTTATCAAGTAATGCTGGTCAAGTCAGGAAGAGCTTATCAATTAAGCCACATGCAGACAGCTCTGGCTATTTTATGTCTTTGTCTGTTGTCAACAACATTTTAAAAACCAAAGAATACTTGTCTGTTCCAGTTACAACTGCTGAGTTTGCTGTGATGAAGACTGCTTGCAGCTTTGCATTGCCGCACATTATGGGTTGGGATCGTCTGACTCATGATCAGTCCAGAGAAATGCTTGGTCATCAGTCAAAGGTGGACCCGCAAGTTCTAGACTTGGAGTGGGCAAAACCGGGTTGCTTGCCAAGTCGGTCTCCGAGCAATTTTGATTTCTGGGAAGTAGAGGCTGAAATTGGAGGCGGAAGTGACGTGTTATTTGGTGAGGTGGAGAGTGAAGGTCATCAATCCTGTTCAATGTCTCGAGATGCTTCCAATTCCTTTTCTGGGCTGGGCTATACCTGTTTGGCTCATGCTGTTTGA 1089 0.4472 MPVPHTMNLKYSPEQFMGIPCVCFRGYQQSGNPFRARTLTVETTWTRTAEIVLCCLACPKMLKLSRLFASRHQVSKTLLSQKADIRDSLWLLCGSTTHSAGISTATNNYSAKGHTSSQIFVPYSVFKGKAALSLRPLLPTFTKLHSGTVIIDRRGSMMMTFVPAFGERKYDWEKKQRFALSATEVGSLISMGPTGSCEFFHDPAMLSSNAGQVRKSLSIKPHADSSGYFMSLSVVNNILKTKEYLSVPVTTAEFAVMKTACSFALPHIMGWDRLTHDQSREMLGHQSKVDPQVLDLEWAKPGCLPSRSPSNFDFWEVEAEIGGGSDVLFGEVESEGHQSCSMSRDASNSFSGLGYTCLAHAV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0037 362 SUPERFAMILY ssDNA-binding transcriptional regulator domain 117 285 IPR009044 GO:0003677|GO:0006355
Lele16g0037 362 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 80 300 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lele16g0037 362 Gene3D Transcriptional Coactivator Pc4; Chain A 109 285 IPR009044 GO:0003677|GO:0006355
Lele16g0037 362 Pfam Whirly transcription factor 125 259 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0037 Lele-ChrLele16 237721 242791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0037 116 300 Whirly Transcription Factor Family AT1G71260 69.841 2.26e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lele16g0037 Whirly 1.1e-56 CL0609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2383 13 29445477 29448161 Lele16g0037 16 237721 242791 hybridization
Lele14g2314 14 27808217 27809722 Lele16g0037 16 237721 242791 hybridization