LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g0036	ATGGCTTCTCTCTCTTGCTCTGCCGCTGACCTTGCCCCACTCCTCACCGCCGCCCCCAACGCAACCGGCGCTGCCACCTACCTCTGTTCCCACCTCCAAGCCATATCCACCAAGCTAAGTGACACTGCCTATGCCGTCAACAACACCTACCTTCTGTTCTCCGCGTATCTGGTGTTCGCCATGCAACTTGGTTTCTCCATGCTGTGCGCCGGTTCAGTGCGAGCCAAGAACACCATGAACATCATGCTCACCAACGTGCTCGATGCTGCCGCCGGCGGCCTCTCTTACTATCTGTTTGGTTTTGCCTTTGCATTCGGGTCCCCCTCCAACGGCTTCATCGGTCGCCACTTCTTTGGCCTCCGACACTTCCCTTCCCAATCCGGAGACTATAGCTTCTTCCTCTATCAATGGGCTTTTGCCATAGCGGCCGCTGGAATCACCAGCGGCTCCATTGCTGAGAGAACCCAATTCGTGGCTTACCTCATCTACTCCTCTTTTCTCACTGGCTTCGTTTACCCAGTCGTTTCCCATTGGTTCTGGTCCACTGACGGGTGGGCCAGCCCCACTCAGGCCGGTAGCCTTTTATTTCGGTCCGGTGCCATTGACTTTGCCGGTTCGGCCGTGGTACACATGGTGGGCGGCATAGCAGGGTTATGGGGTGCCTACTTGGAAGGGCCAAGAATTGGGCGATTCGACCGGACGGGCCGGTCTGTTGCCTTGCGGGGGCACAGCGCCTCCCTAGTTGTGTTGGGGTCCTTCTTGTTATGGTTCGGGTGGTACGGGTTTAACCCGGGCTCATTCCTGACGATCTTGAAGGGATACGGAGGGGGTGGGAATTATTATGGTCAATGGAGTGCGATAGGCAGGACAGCCGTGACGACGACATTGGCTGGGTGCACGGCGGCGCTGACCACCTTGTTTGGGAAACGCTTATTGGTGGGACACTGGAACGTGATAGACGTGTGCAACGGGCTGCTCGGGGGATTTGCGGCGATAACGTCCGGGTGCTCCGTGGTAGAGCCATGGGCGGCGATCATATGCGGCTTCGTGGCGGCATGGGTGCTGATCGGGCTGAACAAGCTGGCGGCGAGGTTGGAATACGACGACCCGCTGGAGGCGGCGCAGCTGCACGGCGGGTGCGGAGCGTGGGGATTGCTGTTCACGGGACTGTTGGCGAAGAAGGAATACGTGGAGGAGGTGTACGGAGGAGGGAGGAAGTACGGGCTGCTGATGGGAGGGGGAGGGAGGCTGCTGGCGGCGCAGGTGGTGGCGATAGTGGTGGTGTGCGGGTGGGTGACGGCGACGATGGGGCCGCTGTTCTACGTGCTGAATAAGATGAAGCTGTTGAGGATATCGAAGGAGGACAAGATGGCGGGAATGGATCTGACGAGGCATGGAGGCTTTGCTTATGCTTATCACAACGAAGACGAAAGCGTGAGGCCTGCTGGCTTCATGATGGGCAAGATCGAGCCTTCAAATTCCCTGGCCACCACTCCCACCCCATAG	1506	0.5863	MASLSCSAADLAPLLTAAPNATGAATYLCSHLQAISTKLSDTAYAVNNTYLLFSAYLVFAMQLGFSMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGSPSNGFIGRHFFGLRHFPSQSGDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSTDGWASPTQAGSLLFRSGAIDFAGSAVVHMVGGIAGLWGAYLEGPRIGRFDRTGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKGYGGGGNYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGLNKLAARLEYDDPLEAAQLHGGCGAWGLLFTGLLAKKEYVEEVYGGGRKYGLLMGGGGRLLAAQVVAIVVVCGWVTATMGPLFYVLNKMKLLRISKEDKMAGMDLTRHGGFAYAYHNEDESVRPAGFMMGKIEPSNSLATTPTP	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g0036	501	ProSitePatterns	Ammonium transporters signature.	202	227	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Lele16g0036	501	PANTHER	AMMONIUM TRANSPORTER	28	466	-	-
	Lele16g0036	501	FunFam	Ammonium transporter	28	484	-	-
	Lele16g0036	501	Pfam	Ammonium Transporter Family	50	470	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Lele16g0036	501	SUPERFAMILY	Ammonium transporter	44	451	-	-
	Lele16g0036	501	Gene3D	Ammonium transporter AmtB like domains	25	484	IPR029020	-
	Lele16g0036	501	TIGRFAM	amt: ammonium transporter	47	470	IPR001905	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g0036	Lele-ChrLele16	233583	235088	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele16g0036	2	501	Inorganic Solute Cotransporters	AT1G64780	77.756	0.0	783