Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2419 ATGTATAAGCCAAACAGTGTTCCTAGTTTAAGTGTACTTGGAAGCAACTCATTGGTACATGGTCGGCAATTTGATCGTGGTGCCAGTACAATGGACCCAGTCAATGGAGGGAACAGTCTCACCAACAATCCCAATTTGAGCTCAAAGCAACGGTTACGCTGGACACATGAGCTCCATGAACGCTTTGTTGATGCTGTTGCACAGCTTGGTGGGCCTGATCGTGCCACACCTAAAGGTGTCCTCAGAGTGATGGGTGTACAAGGTTTAACAATATATCACGTCAAAAGCCATCTGCAGAAATATCGTCTTGCCAAATACCTCCCTGACTCCTCATCTGATGGGAAAAAAGCCGACAAGAAAGAAACTGGGGATATGCTTTCCAATCTAGACGGTTCACCAGGTATGGAAATTACTGAAGCACTAAAGCTGCAAATGGAGGTGCAGAAGCGATTACATGAGCAATTAGAGGTTCAGAGACAGCTACAACTTCGGATTGAAGCCCAGGGTAAATACTTGAAGAAGATAATTGAAGAGCAGCAGCGGCTAAGTGGCGTTCTTTCCCAAGCACCCGGCTCAGGGGATGCAGCCTCAGTGCCAGGTGACACCTGCCAAGACCCTGACAATAAGAATGACCCGTCAACCCCTGAGTGCCCCCTTCAGGAAAAAGCTGCTAAAGAACGTGCTCCAGTGAAAAGTCTTTCAATCGACGAATCCTTTTCATCTCACAATGAACCATTAACGCCAGATTCTGGCTGCCATGCTGGTTCCCCTAACAACAGCCCTAGAGGGAAGACAATGACGAAAAAGCAACGGGTGAGCATGGAGGGAGCATATTCTAAACCTGAAATGGTGCTTCCACATCATATACTTGAGTCGAGCATGTCATCGAGCCAGCCATTAAACAGATTGTTTCCTACCCATGAGCAGTTTGATCCTTCACTAGGAATACCTACCAGAAGTAATGAGGAACTGGAGAATGTTGGCGGGGCCAATCTGTGA 999 0.4715 MYKPNSVPSLSVLGSNSLVHGRQFDRGASTMDPVNGGNSLTNNPNLSSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKETGDMLSNLDGSPGMEITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSQAPGSGDAASVPGDTCQDPDNKNDPSTPECPLQEKAAKERAPVKSLSIDESFSSHNEPLTPDSGCHAGSPNNSPRGKTMTKKQRVSMEGAYSKPEMVLPHHILESSMSSSQPLNRLFPTHEQFDPSLGIPTRSNEELENVGGANL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2419 332 FunFam Myb family transcription factor 48 106 - -
Lele15g2419 332 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Lele15g2419 332 Gene3D - 48 107 - -
Lele15g2419 332 MobiDBLite consensus disorder prediction 186 270 - -
Lele15g2419 332 Coils Coil 138 158 - -
Lele15g2419 332 MobiDBLite consensus disorder prediction 32 48 - -
Lele15g2419 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Lele15g2419 332 MobiDBLite consensus disorder prediction 25 48 - -
Lele15g2419 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 43 321 IPR044848 GO:0003700
Lele15g2419 332 MobiDBLite consensus disorder prediction 296 332 - -
Lele15g2419 332 MobiDBLite consensus disorder prediction 234 267 - -
Lele15g2419 332 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Lele15g2419 332 MobiDBLite consensus disorder prediction 109 125 - -
Lele15g2419 332 MobiDBLite consensus disorder prediction 313 332 - -
Lele15g2419 332 MobiDBLite consensus disorder prediction 108 133 - -
Lele15g2419 332 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Lele15g2419 332 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2419 Lele-ChrLele15 28468030 28470773 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g2419 84 332 G2-like Transcription Factor Family AT2G01060 61.265 2.58e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele15g2419 Myb_DNA-binding 2.2e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0028 13 318379 325279 Lele15g2419 15 28468030 28470773 hybridization
Lele14g0023 14 473672 479720 Lele15g2419 15 28468030 28470773 hybridization