Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2412 ATGCTTTTGCTACTATTCTCATTAACAAACATTTCTTCTTCAGCAACCCTAAGGAGTAATATGCTCGACAATAGACTCGCTACAACTCCTCTCATGGGAAATAAAAAAACAACAATAAAGAGATATGTCCTCCTTCTGGATTCTCTGCGAAGGCAAACTCATTTTTTCACGTTGTCGGGGGTTTTACATAGAATTAGATTTAAGAGGGCATTCTCTTTGTTGTACAGTGCGCAAGGAGCTATGCATAATAAGAGAGAACTTTGTAGAAATTTTCAGCGAGGCAGCTGCCAATATGGAGAAAGGTGTAAATTTCTTCACCTGCTGCCACAGCAGCAAAAGCAAACTATCAGTCCTTTTGGATTTGGGTCCCACTCCAGTTCACCCCAGAAACAAACTACCAATCCTTTTGGATTTGGGTCTCACTCCAGTTCACAGCAACAGCATAAGACCAATCCTTTTGGATTTGGTGTGCAGAACAGCTCCCAGTCAATGGGGGGCGCTAATTCAGAGTTCAAACAACAGTTCAAGCCTTTTGAAAACAAATGGACTCGACCTTCTTCCTCAACCCAGAATAATGCTTCACGAAAAACTGATGCCAATTCTCAACCAGCGAATCATACGTGCACAGATCCTGAAACTTGCAAACGTCAGATTGTAGAAGATTTTGAGCAAGAGAAACCACTTTGGAAGCTTACATGCTATGGTCATAATAAAGGTGGTCCTTGTGACATTGTTGGTGATATTAGCTGTGAAGAATTGCGGGCAGCTGCATATGAGGATGCTCGTCGTGGGATGGCCTTACAATCAATTGTTGAGAGAGAGAGAAATCTACTAAATTCCAAGTTAGTGGAGTTTCAGAACCTTCTTCGTGAACCTTACAAAATACCGCTGAGTTCTCTTACAAGTGATAAGAATCAGTCTCTTGGAATTGATGCAAACCCATTTTCGAGGACTTCACAAAATAATAATCCTCTGTCTGTCTCTAGTTTTAGTCAACTGGGGACTTCATTGAACATGGGTATTGAAAGGCCTTCTGCACCCACAGTAGATCCTCAGGCCCAACCTAGCTTCTTCTTTGGAACTAGAGGAAATCCGTTGGCATCCAATGTGACAAACCAAACGGGCGGAGGCATTGCAGGTGGCCAAATTAACCTCTTTCCGACATCACCAGAAGTTGCAAAGTTGCCCAGCGTGACTACACAGCAATCGTTTGTTGCGAGCAATGGCTCTAGTTCTAGTATGATGTTTTCAGCAAGCACAGGTGTTCAGTTGTCAAGCAAGTCCAAAGATGAGAATTTCTCTGGAGATACCAGTATTTGGTTGAAAGAGAAATGGATTCCTGGAGAGATTCCGGAAGAAGCTCCTCCTGATGCATTTGTAAGGTAG 1386 0.4271 MLLLLFSLTNISSSATLRSNMLDNRLATTPLMGNKKTTIKRYVLLLDSLRRQTHFFTLSGVLHRIRFKRAFSLLYSAQGAMHNKRELCRNFQRGSCQYGERCKFLHLLPQQQKQTISPFGFGSHSSSPQKQTTNPFGFGSHSSSQQQHKTNPFGFGVQNSSQSMGGANSEFKQQFKPFENKWTRPSSSTQNNASRKTDANSQPANHTCTDPETCKRQIVEDFEQEKPLWKLTCYGHNKGGPCDIVGDISCEELRAAAYEDARRGMALQSIVERERNLLNSKLVEFQNLLREPYKIPLSSLTSDKNQSLGIDANPFSRTSQNNNPLSVSSFSQLGTSLNMGIERPSAPTVDPQAQPSFFFGTRGNPLASNVTNQTGGGIAGGQINLFPTSPEVAKLPSVTTQQSFVASNGSSSSMMFSASTGVQLSSKSKDENFSGDTSIWLKEKWIPGEIPEEAPPDAFVR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2412 461 SMART c3hfinal6 82 108 IPR000571 GO:0046872
Lele15g2412 461 Gene3D - 77 154 - -
Lele15g2412 461 ProSiteProfiles Zinc finger C3H1-type profile. 83 109 IPR000571 GO:0046872
Lele15g2412 461 SUPERFAMILY CCCH zinc finger 81 110 IPR036855 GO:0046872
Lele15g2412 461 MobiDBLite consensus disorder prediction 116 210 - -
Lele15g2412 461 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 173 299 - -
Lele15g2412 461 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 106 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2412 Lele-ChrLele15 28377442 28391747 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele15g2412 zf-CCCH 4.6e-10 CL0537