Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2403 ATGGCATCGTCCCAGGTTGAAATTTCCCTAACATCGCCATTTGGTTGTGTTCTCAGAAAATATAGCCATCGCGAGAGATTCAGGGAAAGTACTTCTTCTCGAGTTTCTTCTTCACAAGTAACTCTCCAGAGCAACAATGACAGAAGAAGCTTAGTCGTCGTCGGAGATCATCGTGTCGACAACATCTGCAATAATAATGCAGCACCACAAATTGATGTTGTTAAGAACAACAACAACAACAACAACAACATGAACAATGCTAAGGAGAAAGAAGATGAATCATCCGTATCCTCGTCGAACAACAACGTTAACCCTAGGCAATCACAGATTATGGATCGATGGGCTGCAAGAAAAGCGAAAGAAATAGTGTCAACGATCGAGACAGAAGCTGAGCTATTGGAGAATCTAGGTTCTTCTGCTACTTCATCGTCAGAAACATTGAATAATCGTGTAGCATCGTCTCTGGTTCAAATATGGGAAAAGAGGTTGAATAATAATAACCAGAACGGCCAATCACTCAAGTGCAATATTACAACAAGCAGAACATCATCGCTTGGGTCATCAGATGTCGGAGAAATATTCACGGATGAATCATCGTACTCAGATTGGGCAACAAGTGATACAAATAATGAAGCTACAACATGTTCGACCCCAAAGGTGGCGGATATTATAAAGAGATTGAAGGAGAATAATTATTATGGGCAAGATCAACAAAGTAATAATTCAAAGAATAATAATAATAATAATAATATGATGATGATGATGGGATTCTCGTCGTGTTTGTCAAGTAGGGAACAAGGACAAGGCACCAGCGTGGTGCTTCATCATGTCGCGAGATCGCCTCGCCTTCGAGGTCGAAAAGCGCTTACAGATTTGCTTATGCAGATGGAACGTGACAGAAATGGTGAGCTCAATAATCTGGCGCAGCTTGCACCTGTCTCCAATTTCTCACGAAGAGGTCGAGGTCGTATTCAGTCACTGCTGCGGCTTAGATTATTAAAACGACACCATGAATCAACAATCTATGAAGCGAAGAGGAGACAACCAAAAGGGTCCACAATTATGCAACTCAGGGAAAGATTTAATATAGAAGCCAAACAAGAAAGCACAACTCAGCTAGAAATAGTTAGTTCAAGCAACACGCACTCTGATCAACCCGAAAACCCTCTTCCCCCTCCTAACCCTAAGGGTGAGCATGGTTCGAGTCCGATCAGGTCAGACCGGGTGGTCAATGAGACAAATGGCCACCAAAATGATAATGATCACTCAGTAGCATGTGGTCAAGAATCGGAGTCATCTCAAACAAATGAAGAAGAAGAAGCCCATGCAAGTTCATCAGAAACAGTAGTATGCTTAGAGGCTCAGAACATTATTGCATCATCATCACAAGAAGTTGCGGAGAGAAGTAGTTGCAATATGGTTGATTCATCAGATGCAAATCATGAGACAAAAGAAGATGAAGCAGACGTGGCAGAGGTAAAGAGGGATGATAATAACAGTGTTGAGACTGAAATCAATTATGTGGAAGAAGCGATGAATATGATTGAACAAGATCATGAATATGCAAGTGAAGGCAATGATTATGATGAGCAAAATTACGAGGATGATGAACATTATTATGATTGGATCAGTTCTATCGCCCGCCCTAGAAGCTATTGGGAAGATCGTAGACAAGCTTGGTACAAGGAGATGCTTGACACTGCTTCTTCTGATAATAAATTAGAGATACGTCAACTTCTTCAACGAAGAACAGTTTCAACTTTCCTTTCAAGTGACTTCAGAGAAAGAATGGACAAATTGATGGAATATCACATAGGAACACAGACACAATTTATCAGTAGCCAAGAAGATAATGAAGACAATGAAGGGAGAATGGGGCAACTAATGTCATTTTTGCAACAACATATACAGCGTCATGGTAGTAACCTTGAAGAAGAAGAAGCTGAAAAACAAGAGGTACAAGAAGAAGAAGAAGAAGAGAGCTTGAGTAGTAGTGGTTATACTGAAACCAGTGATGATGGTAATCAATCATCATCGTCATCATCAACACAGAATCTTACCTCGTCTTCTCCGAACATGTCATCATGGAGCTATAGAGACAACGAAACCAGTGATGATTCTGACAGAGTTGATGAGTCTGCTACATCTTCAACACAGACTTCTCGATCCCTATCTTTCTACCAAGATAGTCACCAATCCTCCTCCTCCAATATTAATCCTCATTCAATGGAAATGGATTTGATATATGATATGAGAGGGCAGATGGAGCAACTGTACAGAGAAATGGCTGAGATCAGAAAATCATTAAAGAGCTGCATAGATATGCAGATGATGCTTCAACAATCAATGAAACGCGAAGTTAACTCAGCAGAGAGAGAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAGTGAGCAGAAGAAGGCACAGAAGAAAGGGCAATGTTGTATATGCTACGAGAAGAAAGTAGACTCACTTTTATACAGATGTGGGCACATGTGCACGTGTTTGAAGTGTGCGAATGAGTTGCAATGGAACAGTGGCAAGTGTCCAATATGTCGAGCTCCCATAGCAGATGTTGTAAGAGTTTACGTCGATGCTTAA 2601 0.4087 MASSQVEISLTSPFGCVLRKYSHRERFRESTSSRVSSSQVTLQSNNDRRSLVVVGDHRVDNICNNNAAPQIDVVKNNNNNNNNMNNAKEKEDESSVSSSNNNVNPRQSQIMDRWAARKAKEIVSTIETEAELLENLGSSATSSSETLNNRVASSLVQIWEKRLNNNNQNGQSLKCNITTSRTSSLGSSDVGEIFTDESSYSDWATSDTNNEATTCSTPKVADIIKRLKENNYYGQDQQSNNSKNNNNNNNMMMMMGFSSCLSSREQGQGTSVVLHHVARSPRLRGRKALTDLLMQMERDRNGELNNLAQLAPVSNFSRRGRGRIQSLLRLRLLKRHHESTIYEAKRRQPKGSTIMQLRERFNIEAKQESTTQLEIVSSSNTHSDQPENPLPPPNPKGEHGSSPIRSDRVVNETNGHQNDNDHSVACGQESESSQTNEEEEAHASSSETVVCLEAQNIIASSSQEVAERSSCNMVDSSDANHETKEDEADVAEVKRDDNNSVETEINYVEEAMNMIEQDHEYASEGNDYDEQNYEDDEHYYDWISSIARPRSYWEDRRQAWYKEMLDTASSDNKLEIRQLLQRRTVSTFLSSDFRERMDKLMEYHIGTQTQFISSQEDNEDNEGRMGQLMSFLQQHIQRHGSNLEEEEAEKQEVQEEEEEESLSSSGYTETSDDGNQSSSSSSTQNLTSSSPNMSSWSYRDNETSDDSDRVDESATSSTQTSRSLSFYQDSHQSSSSNINPHSMEMDLIYDMRGQMEQLYREMAEIRKSLKSCIDMQMMLQQSMKREVNSAEREKKKKKKKKSSEQKKAQKKGQCCICYEKKVDSLLYRCGHMCTCLKCANELQWNSGKCPICRAPIADVVRVYVDA 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2403 866 CDD mRING-HC-C3HC5_NEU1 814 853 - -
Lele15g2403 866 MobiDBLite consensus disorder prediction 231 251 - -
Lele15g2403 866 MobiDBLite consensus disorder prediction 406 432 - -
Lele15g2403 866 Pfam Zinc finger, C3HC4 type (RING finger) 811 859 - -
Lele15g2403 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 865 IPR013083 -
Lele15g2403 866 MobiDBLite consensus disorder prediction 366 385 - -
Lele15g2403 866 MobiDBLite consensus disorder prediction 664 700 - -
Lele15g2403 866 MobiDBLite consensus disorder prediction 73 105 - -
Lele15g2403 866 ProSiteProfiles Zinc finger RING-type profile. 814 853 IPR001841 -
Lele15g2403 866 MobiDBLite consensus disorder prediction 478 497 - -
Lele15g2403 866 SUPERFAMILY RING/U-box 802 858 - -
Lele15g2403 866 MobiDBLite consensus disorder prediction 473 497 - -
Lele15g2403 866 MobiDBLite consensus disorder prediction 648 663 - -
Lele15g2403 866 MobiDBLite consensus disorder prediction 364 447 - -
Lele15g2403 866 PANTHER BNAC05G24000D PROTEIN 1 865 - -
Lele15g2403 866 MobiDBLite consensus disorder prediction 713 741 - -
Lele15g2403 866 MobiDBLite consensus disorder prediction 783 804 - -
Lele15g2403 866 Coils Coil 116 136 - -
Lele15g2403 866 Coils Coil 629 663 - -
Lele15g2403 866 MobiDBLite consensus disorder prediction 636 741 - -
Lele15g2403 866 Coils Coil 780 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2403 Lele-ChrLele15 28300293 28304787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g2403 813 862 C3H Transcription Factor Family AT3G06140 42.000 2.80e-08 55.1