Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2303 ATGGCTCATTCAGTTGAGCCATCCTCATCTTTGAGCTTTACTTCATCATCCCGTTTATCAAATGGCGGCTCAGTCAGCCACAATGTATGTGCTTCTCATTGCGCTGATCCTGGACCTAACCTTGAAGCAATCAGTTTGAGTAAGCTTAGCTCTAATTTAGAGCAGCTTTTGCTTGATTCTGATTGTGATTACAGTGATGCTGACATAATTGTTGAAGGAATTCCAGTCGCTGTTCATCGATGTATTCTTGCCTCTAGAAGCAAGTTTTTTCGTGAGTTATTCAAGAGGCAGAAAGGAACTCAAGGGAAGGAAGGCAAATTAAAGTATTTGATGAGTGATTTCTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTCATTTTTTTGGGATATGTGTATACCGGGAAACTCAAGCCCTCTCCAATGGAGGTGTCAACATGTGTTGACAATGTATGTGCCCATGATGCTTGTCAACCTGCAATTAATTTTGCTGTTGAGCTGATGTATGCATCTTCCATTTTTCAAATGCCAGAATTGGTATCACTTTTCCAGCGACGTCTTCTTAATTTTGTAGGGAAGGCTTTTGTGGAAGATGTTATACCAATCCTCATTGTTGCTTTCCATTGTCAATTGAGCCAACTCGTCACTGAATGCATTGATCGGGTGGCACGATCAGACCTTGACTATGTCTCAATTGAGAAGGAGATTCCCCTTGAACTCTCAGAAAAAATTAAATTACTTCGGCGCAGCACCCAGCACGATGCTGAAGATAATGCTCCTTTGGTGGATCCATTGCATCAAAAGAGAATCACCAGAATACACAAGGCATTGGACTCGGATGATGTTGAGCTTGTTAAACTTCTTTTAACTGAGTCTGATATAACTTTAGACGAAGCCAATGCTCTCCATTACGCTGCGGCATACTGTGATCCTAAGGTTTTCTCTGAGGTACTTGGTTTGGGTCTTACCAATGTCAATCTTAGGAATTCTCGAGGATACACTGTGCTTCATATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTTTCACTTCTTACAAAGGGGGCTCATGCATCAGAGTTGACTTTGGATGGTCAGAGTGCTGTTAGCATCAGTAGGAGGTTAACAAGGCCAAAGGATTACCATGCAAAAACAGAACAAGGGAAGGAAACAAACAAAGATCGAATGTGTATAGATGTTCTTGAAAGAGAAATGCTTAGAAACCCAATGTCTAGTGATGCTTCTATGTCTTTCCAAATAATGGGTGATGATCTGCACAGGAAGCTGCTATACCTTGAGAACAGAGTGGGATTTGCAAGATTGTTCTTCCCCGCAGAAGCCAAAGTAGCCATGGACATTGCAGAGGCTGAGACAAAAGGCTCTAGTGGGAATTTCAGGGAGGTTGATCTTAACGAGACTCCCATAATGCAAAACAGAAGACTTCTTTCCAAGGTGGAAGCCCTTGTGAAAACAGTGGAGACGGGCCGACGATACTTTCCTCATTGCTCAGAAGTGCTGGATAAGTTCATGGAGGATGAGCTACCTGATTTGTGTTACCTCGAGCAGGGTTCCCAAGAAGAGCAGAGAATCAAGACGACGCGTTTCATGGAGCTTAAAGACAGTGTTCAAAAGGCCTTCAACAAGGACAAAGCTAATTTTCTCCCCTCTGGGATTTCTCCTTCATCTTCCTCATCGTCCATGAACAATCCTGTGCACAACAAGGCAAGAAAAGTGTGA 1737 0.4289 MAHSVEPSSSLSFTSSSRLSNGGSVSHNVCASHCADPGPNLEAISLSKLSSNLEQLLLDSDCDYSDADIIVEGIPVAVHRCILASRSKFFRELFKRQKGTQGKEGKLKYLMSDFLPYGKVGYEAFLIFLGYVYTGKLKPSPMEVSTCVDNVCAHDACQPAINFAVELMYASSIFQMPELVSLFQRRLLNFVGKAFVEDVIPILIVAFHCQLSQLVTECIDRVARSDLDYVSIEKEIPLELSEKIKLLRRSTQHDAEDNAPLVDPLHQKRITRIHKALDSDDVELVKLLLTESDITLDEANALHYAAAYCDPKVFSEVLGLGLTNVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGAHASELTLDGQSAVSISRRLTRPKDYHAKTEQGKETNKDRMCIDVLEREMLRNPMSSDASMSFQIMGDDLHRKLLYLENRVGFARLFFPAEAKVAMDIAEAETKGSSGNFREVDLNETPIMQNRRLLSKVEALVKTVETGRRYFPHCSEVLDKFMEDELPDLCYLEQGSQEEQRIKTTRFMELKDSVQKAFNKDKANFLPSGISPSSSSSSMNNPVHNKARKV 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2303 578 Pfam Ankyrin repeat 332 356 IPR002110 GO:0005515
Lele15g2303 578 Pfam BTB/POZ domain 61 181 IPR000210 GO:0005515
Lele15g2303 578 SUPERFAMILY POZ domain 49 189 IPR011333 -
Lele15g2303 578 MobiDBLite consensus disorder prediction 554 572 - -
Lele15g2303 578 CDD BTB_POZ_NPR_plant 48 191 - -
Lele15g2303 578 SUPERFAMILY Ankyrin repeat 262 372 IPR036770 -
Lele15g2303 578 MobiDBLite consensus disorder prediction 553 578 - -
Lele15g2303 578 Pfam NPR1/NIM1 like defence protein C terminal 373 565 IPR021094 -
Lele15g2303 578 Gene3D - 265 406 IPR036770 -
Lele15g2303 578 SMART ANK_2a 268 296 IPR002110 GO:0005515
Lele15g2303 578 SMART ANK_2a 297 327 IPR002110 GO:0005515
Lele15g2303 578 SMART ANK_2a 331 363 IPR002110 GO:0005515
Lele15g2303 578 Gene3D Potassium Channel Kv1.1; Chain A 40 223 IPR011333 -
Lele15g2303 578 ProSiteProfiles Ankyrin repeat profile. 331 363 IPR002110 GO:0005515
Lele15g2303 578 PANTHER REGULATORY PROTEIN NPR3 11 570 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lele15g2303 578 ProSiteProfiles BTB domain profile. 65 141 IPR000210 GO:0005515
Lele15g2303 578 ProSiteProfiles Ankyrin repeat region circular profile. 331 356 - -
Lele15g2303 578 SMART BTB_4 65 191 IPR000210 GO:0005515
Lele15g2303 578 FunFam regulatory protein NPR3-like 265 405 - -
Lele15g2303 578 MobiDBLite consensus disorder prediction 1 21 - -
Lele15g2303 578 FunFam Regulatory protein NPR3 39 223 - -
Lele15g2303 578 Pfam Domain of unknown function (DUF3420) 226 274 IPR024228 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2303 Lele-ChrLele15 26857030 26862190 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele15g2303 NPR1_like_C 4.8e-81 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g2303 15 26857030 26862190 Lele15g2303 15 26857030 26862190 ECH
Lele13g0142 13 2343607 2348099 Lele15g2303 15 26857030 26862190 hybridization