Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2280 ATGGGTGCTCCTAAGCAGAAGTGGACACAAGAAGAAGAAGCAGCACTAAAAGCTGGAGTTGTTAAGCATGGGGTTGGAAAATGGCGCACAATACTTAAGGACCCAGAGTTTAGTAGTGTCTTGTTTCTGCGGTCTAATGTAGATCTTAAGGATAAATGGAGAAATCTGAGCGTAATGGCAAATGGATGGAGCTCCCGAGACAAGTCTAGATTAGCTGTTAGAAGGACACATCAGGTCTCAAAACAAGATGAAAATGCAATGACTGGCTCTTCTGTTGTTCCGAGTGATGAAGAACTTATGGATGCCAGTGCTCCTCAAGTTCCTAGAGATATGCTTCAGATTCCTGGTCCAAAGAGGTCTATTGTAAGAATGGATAACCTTATACTGGAAGCAATAGCTAGCCTGAGGGAGCCTGGCGGTTCCAACAAGACAAATATTGCAGCTTACATAGAGGACCAATATTGGGCACCTCCAGATCTCCGAAGGTTGTTGTCGACAAAACTGAAATCATTGACAGCAAGTGGGAAACTAATCAAGGTGAAACGAAAATATAGGATTGCTCCTATGCCAGCATATCCAGACCGAAGAAGAAACTCATCCTTGTTATTGACGGATGCAAGGCAGAGAATCTCTATGAAGATGGACAAGGATGAGGCCAATGTCATCACTAAGTCTCAGATAGATTTAGAACTAGCAAAGATAAGGTCAATGACAGCCCAAGAGGCAGCTGAAGTCGCTGCTCGAGCAGTTGCAGAAGCAGAAGCCGCCATAGCAGAAGCTGAAGCAGCAGCAAAGGAGGCAGAGGCTGCTGAAGCTGATGCAGAGGCAGCACAAGCTTTTGCAGATGCTGCAGTGAAGACAATTAATGGAAGAAACACCCCGAAATTGAGGCAATCTGTAGAGCTGATGCGAGCTTGA 918 0.4521 MGAPKQKWTQEEEAALKAGVVKHGVGKWRTILKDPEFSSVLFLRSNVDLKDKWRNLSVMANGWSSRDKSRLAVRRTHQVSKQDENAMTGSSVVPSDEELMDASAPQVPRDMLQIPGPKRSIVRMDNLILEAIASLREPGGSNKTNIAAYIEDQYWAPPDLRRLLSTKLKSLTASGKLIKVKRKYRIAPMPAYPDRRRNSSLLLTDARQRISMKMDKDEANVITKSQIDLELAKIRSMTAQEAAEVAARAVAEAEAAIAEAEAAAKEAEAAEADAEAAQAFADAAVKTINGRNTPKLRQSVELMRA 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2280 305 SUPERFAMILY "Winged helix" DNA-binding domain 117 196 IPR036390 -
Lele15g2280 305 Coils Coil 243 280 - -
Lele15g2280 305 FunFam Telomere repeat-binding factor 1 118 198 - -
Lele15g2280 305 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele15g2280 305 Gene3D - 118 196 IPR036388 -
Lele15g2280 305 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele15g2280 305 FunFam Telomere repeat-binding factor 1 2 58 - -
Lele15g2280 305 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lele15g2280 305 SMART sant 4 59 IPR001005 -
Lele15g2280 305 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lele15g2280 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Lele15g2280 305 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Lele15g2280 305 Gene3D - 2 59 - -
Lele15g2280 305 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele15g2280 305 CDD SANT_TRF 6 56 - -
Lele15g2280 305 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2280 Lele-ChrLele15 26622890 26628707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g2280 1 296 Single Myb Histone (SMH) Gene Family AT1G49950 64.026 6.50e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele15g2280 Linker_histone 4.4e-08 CL0123