LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele15g2276	ATGGAGATATCTTCGGGAGAGGGGGCAAGCAACAGCAAGAACGACAACACTTCTCGAAAGCGACCTAAGATTACCATTCGCTACAATAGTAGAATGAACGAACGACATGTCGTAGAGTACCAAGGTGGAAGGACCGAGAACGAGGATCGAGGAAACGACGCCGGGGAAGGAACGGAACGACAGGTTGAAGAGACTGAAGAAGAAGAAGCGGAAGACTGCAAAGAATACGATGACGGCGATGAGTCATCCTGTGGGGATCTTGATATCCCCAATGTGAACTGTGGAGAGGAAGTCGCTTCCGGAGGAGACGGTGGTTGTGGTGGTGGTGTTACTAGGGATGGGTCAATCTCTATGATTCTCACCGATCCTGATTTTCTCGATTGCTGCATTTGCTGCGAGCCTTTGGCTATTCCTGTATTTCAGTGCAAGAATGGACATATTGCTTGCTCTACCTGCCGCGCCCGACTTGCCAATAAGTGTCACTTGTGCTCGGCGCCCACCGGCCACATCCGTTGCCGAGCCATCGAGAAGGTATTGGAATCTGTTAAAATATCATGCCGCAATGCAAGACATGGCTGTATAGAGAAAATTAATTACACCAACAAAAGTATCCATGAGAAAGATTGCATCTACACCCCATGTTGGTGCCCTTTTGATGGTTGCCAGTTCACTGCTCCCTGCAACAAGTTATCCCAGCACATCAGCCATGATCATCATGAAGCTTTTATAAACTTTCATTATGATAGCTTCGTCTGTGTCATATTGAGGCTCAACCAGAAAGTGGTTGTTCTTCAAGAGCAGAATGACAATAATTTATTTGTTCTTACAAACGACCTGGAGCATCTGGGGAATGTGGTCAAAGTCTTTTACGTTAGCCCCAAGTCACCATTGGCCGAGACGTATCGGTACGATCTTTACGCTAGATCAAAGGGATGCCGTCTGAAACTGAATGCTTTTGTGAACCACACTCGTGGCAGCAATTTTCCTGCTACAACAAAGTTCCTTCTGGTTCCGGCTGATTTTCTCGGTCCTTCTCGACAAGTCCAGCTAGAAATTCGCATAAAGCCCGTAGTTCTTAGTGGTGGTCTACATATGTAG	1098	0.469	MEISSGEGASNSKNDNTSRKRPKITIRYNSRMNERHVVEYQGGRTENEDRGNDAGEGTERQVEETEEEEAEDCKEYDDGDESSCGDLDIPNVNCGEEVASGGDGGCGGGVTRDGSISMILTDPDFLDCCICCEPLAIPVFQCKNGHIACSTCRARLANKCHLCSAPTGHIRCRAIEKVLESVKISCRNARHGCIEKINYTNKSIHEKDCIYTPCWCPFDGCQFTAPCNKLSQHISHDHHEAFINFHYDSFVCVILRLNQKVVVLQEQNDNNLFVLTNDLEHLGNVVKVFYVSPKSPLAETYRYDLYARSKGCRLKLNAFVNHTRGSNFPATTKFLLVPADFLGPSRQVQLEIRIKPVVLSGGLHM	365

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele15g2276	365	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4	81	355	IPR044286	-
	Lele15g2276	365	ProSiteProfiles	Zinc finger SIAH-type profile.	181	239	IPR013010	GO:0008270
	Lele15g2276	365	MobiDBLite	consensus disorder prediction	1	82	-	-
	Lele15g2276	365	SUPERFAMILY	TRAF domain-like	181	342	-	-
	Lele15g2276	365	MobiDBLite	consensus disorder prediction	14	59	-	-
	Lele15g2276	365	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	176	234	IPR013083	-
	Lele15g2276	365	MobiDBLite	consensus disorder prediction	60	82	-	-
	Lele15g2276	365	Pfam	Seven in absentia protein family	170	321	IPR018121	GO:0005737\|GO:0006511\|GO:0007275

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele15g2276	Lele-ChrLele15	26517453	26520710	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele15g2276	86	238	C3H Transcription Factor Family	AT2G41980	31.613	8.90e-21	89.7