Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2258 ATGTGCTTGCCCAATTGGTGTTTGATATTTCGCTCCAACCAAGTTGAAGATGTTCAGAGCCAATTCACACAAGCTCAACTTCGAAGTCTTAAATCAAAAGTCTCGATAGAGCTAGAGAAGAAAAGGGCCACTGCTAGCATTCGTCTCCCAGGGCCTTGGAAGTTGGAACTATTACTTATGGCTGAACCAGAAGACAAGCGTCATGCTTCCCTTGAGGAAGGGAAGAAGAGGAAGAGGAAGAGGAAGAGGAATATACCACGGAAATCTGCAACTGAGGAGCAGTTGGAACCTCAAGAGTCAAACCAGCATGGGGAGGAAGAAGGCGAAGAAGCTAGAGAGAATGATGGGGATAAGGAGCCGGCCGAGTTGCATAACAAAAAGAAGGATAAAAAGAAGAAGCTTGGGGAAGGAGCGAGTGAAGGGGAAAATGCCGGCGATGAGAATGAGGAGGAGGAGGGCGAACGAAGGAAGTTAAAGAATGCTGGGTCTGGAATTATGAGCACTGTGTCATTTGATTCTCTGGGATTGTCTGAACCTACTTTTAAGGGCATTAAGGACATGGGATTCGAGCATACGACTCAGATTCAAGCGAGAGCAATCCCACCGCTCTTGATTGGGAAAGATGTTCTTGGTGCTGCAAGGACGGGTTCTGGAAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGTTGTACCATGCTCAATTCACTCCGCGAAATGGAACTGGTGTCATTGTCATATGCCCTACTAGGGAGCTTGCAATACAGACACATGCTGTAGCGAAAGAACTTCTCAAGTATCACTCCCAGACTCTTGCATTGGTTATTGGAGGTTCAGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGGGGTAAATCTACTGGTCGCAACTCCTGGCCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATATAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTACCAAAGAATAGGCAAACAACTTTGTTTTCAGCCACCCAAACAAAGAAGGTTGAAGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATGTTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCAACAGGGCTATGTTCTTGTTCCTTGTGCCAAGCGTTTTGTTGTTCTCTACTCCTTCTTGAAGAGATATCACTCAAAAAAAAAGATCATGGTCTTTTTCTCTTCATGCAACTCTGTGAAATTTCATGCAGACCTTCTCAATTACATACAGATTGATTGCTATAATATACATGGAAAACAAAAGCAGCAAACACGTACTACTACCTTCTTTAACTTCTGTGAAGCAGAAAAGGGAATTTTGCTCTGTACTGATGTTGCTGCCCGTGGACTCGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCCAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGTGGGGAAGGTGGCAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCAGCAAAGGTTCCTATGAAAGAATATTTATTTGAGGAAAAGAAGCTGTCAAATGTACAATCTCACCTGGAAAAGTTGGTGGGTAGTAATTATTATTTGAACAAGGCAGCTAAAGATGCGTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTGATTTACAGGCTGTGGCAGCTTCATTCTGTTTTTCAACTCCACCAAAGGTGAGTTTAGGCATAGACAGCAGTTCTTCAAAGCATAGGAAGAAAATGCATGATAACTGCCGCCAATTTTTGAGATTTGAATTACATGGAAATATGGAATCCTGA 1938 0.4236 MCLPNWCLIFRSNQVEDVQSQFTQAQLRSLKSKVSIELEKKRATASIRLPGPWKLELLLMAEPEDKRHASLEEGKKRKRKRKRNIPRKSATEEQLEPQESNQHGEEEGEEARENDGDKEPAELHNKKKDKKKKLGEGASEGENAGDENEEEEGERRKLKNAGSGIMSTVSFDSLGLSEPTFKGIKDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYHAQFTPRNGTGVIVICPTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTTLFSATQTKKVEDLARLSFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCAKRFVVLYSFLKRYHSKKKIMVFFSSCNSVKFHADLLNYIQIDCYNIHGKQKQQTRTTTFFNFCEAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPMKEYLFEEKKLSNVQSHLEKLVGSNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSTPPKVSLGIDSSSSKHRKKMHDNCRQFLRFELHGNMES 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2258 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 525 IPR027417 -
Lele15g2258 645 Gene3D - 111 379 IPR027417 -
Lele15g2258 645 CDD DEADc_DDX18 180 377 IPR044773 GO:0003724|GO:0005524
Lele15g2258 645 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 375 IPR014001 -
Lele15g2258 645 MobiDBLite consensus disorder prediction 86 126 - -
Lele15g2258 645 CDD SF2_C_DEAD 390 521 - -
Lele15g2258 645 PANTHER RNA HELICASE 115 552 - -
Lele15g2258 645 Pfam DEAD/DEAH box helicase 193 364 IPR011545 GO:0003676|GO:0005524
Lele15g2258 645 Pfam Domain of unknown function (DUF4217) 552 612 IPR025313 -
Lele15g2258 645 Gene3D - 386 631 IPR027417 -
Lele15g2258 645 Coils Coil 141 161 - -
Lele15g2258 645 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 550 IPR001650 -
Lele15g2258 645 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 321 329 IPR000629 -
Lele15g2258 645 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 169 197 IPR014014 GO:0003724
Lele15g2258 645 MobiDBLite consensus disorder prediction 68 161 - -
Lele15g2258 645 SMART DUF4217_3 551 614 IPR025313 -
Lele15g2258 645 Pfam Helicase conserved C-terminal domain 405 510 IPR001650 -
Lele15g2258 645 FunFam RNA helicase 386 617 - -
Lele15g2258 645 SMART ultradead3 188 393 IPR014001 -
Lele15g2258 645 SMART helicmild6 430 511 IPR001650 -
Lele15g2258 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 376 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2258 Lele-ChrLele15 25927219 25934432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g2258 170 529 Eukaryotic Initiation Factors Gene Family AT3G13920 31.025 7.21e-47 169