Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2218 ATGCAGAGTCAGCTTGTGTGTAATGGGTGCAGGAGCGTTTTGCTTTACCCTAGGGGGGCCACTAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTATTGTCGAGGATGTAGGACATTGTTGATATACACACATGGAGCTACAAGTGTTCGATGCTCCTGCTGTCATACTGTGAACCTTGCACCAGCGTCTAGCCACTTTGCACATATACACTGTGGGAACTGCCGGACAACTCTAATGTATCCATATGGAGCTCCATCAGTCAAATGTGCAGTTTGTCAATATATAACAGATACCAACAGGACCAACGGAAGGGTTCCCAATACTGTACACACACCAAATGGGACAACCAACTTTGGAACAGTACCTTCTACTTCAAGATCAATGCCCAATTCTCAAGGCCAAACTGTTGTGGTCGAAAATCCTATGTCTGTTGATGCAAGTGGGAAACTGGTGACCAATGTTGTTGTCGGTGTAACAACTGAGAAGAATTAA 531 0.4463 MQSQLVCNGCRSVLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCRGCRTLLIYTHGATSVRCSCCHTVNLAPASSHFAHIHCGNCRTTLMYPYGAPSVKCAVCQYITDTNRTNGRVPNTVHTPNGTTNFGTVPSTSRSMPNSQGQTVVVENPMSVDASGKLVTNVVVGVTTEKN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2218 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Lele15g2218 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 109 IPR005735 -
Lele15g2218 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Lele15g2218 176 PANTHER PROTEIN LSD1 2 175 IPR040319 -
Lele15g2218 176 MobiDBLite consensus disorder prediction 116 145 - -
Lele15g2218 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Lele15g2218 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Lele15g2218 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2218 Lele-ChrLele15 18508322 18517724 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lele15g2218 zf-LSD1 2.8e-11 No_clan