Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g2188 ATGGAGGATGCTGAAGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACTGCTCCCGCCAACCCAGCTGCGCCGTCCGGACCTCTGGCCCCATCTGATTCTCCCGCCGTTGTTACCGCCACAGCTAATGGTGTTACACATGGCGCTGCTGACCCTGCTGCGAGCAATATTCCTGGCCGCCGGAGCTTCCGGCAGACGGTTTGCCGGCACTGGCTTCGTGGACTTTGTATGAAGGGCGATGCCTGCGGCTTTTTACACCAATATGACAAAGCGCGGATGCCTGTTTGCCGGTTTTTTAGATTATACGGGGAGTGCCGGGAGCAGGACTGCGTGTACAAGCACACAAACGAAGATATCAAGGAGTGTAACATGTGTCTTTCTCTGAGCAGTTGTTTTACTTTAGGGGTTTGGGAGAAGGAAGGTGTGGAATATTTTGTGGAGTACAAGTTGGGATTTTGTCCGAATGGTCCTGATTGCCGATATAGGCATGCGAAAATTCCTGGACCTCCCCCTCCCGTTGAAGAAGTGCTTCAAAAGATTCAGCATTTATATTCTTATAATTATGGCAACTCCAACAAATTTTTCCAACAAAGAGGTTCTGGCTATTCACAGCAAGCCGAGAAATCTCAATTTCCACAAGGTCCTAATTCTGCAAACCAAGCTGTGCCTGGAAAGCCATTACCAGCAGAATCAGGCAATGTCCAGCAGCAGCAGCAGCAACAACAGCCAATACCACAGTCTCAGCAGCAGGGTAGCCAGAGCCAAATACAAAATACTACTAATGGTCAACCCAATCCGACGAACAAAACAACAATACCATTACCTCAAGGAATATCTAGGTGTGTTCAGAGACCTGTAGCTTTCAAATGGGCTGTATAA 882 0.4921 MEDAEGVLSFDFEGGLDTAPANPAAPSGPLAPSDSPAVVTATANGVTHGAADPAASNIPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMCLSLSSCFTLGVWEKEGVEYFVEYKLGFCPNGPDCRYRHAKIPGPPPPVEEVLQKIQHLYSYNYGNSNKFFQQRGSGYSQQAEKSQFPQGPNSANQAVPGKPLPAESGNVQQQQQQQQPIPQSQQQGSQSQIQNTTNGQPNPTNKTTIPLPQGISRCVQRPVAFKWAV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g2188 293 Gene3D - 57 122 - -
Lele15g2188 293 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
Lele15g2188 293 MobiDBLite consensus disorder prediction 231 277 - -
Lele15g2188 293 ProSiteProfiles Zinc finger C3H1-type profile. 145 167 IPR000571 GO:0046872
Lele15g2188 293 MobiDBLite consensus disorder prediction 199 277 - -
Lele15g2188 293 ProSiteProfiles Zinc finger C3H1-type profile. 91 118 IPR000571 GO:0046872
Lele15g2188 293 SUPERFAMILY CCCH zinc finger 65 88 IPR036855 GO:0046872
Lele15g2188 293 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED 37 259 IPR045348 GO:0003723|GO:0098789
Lele15g2188 293 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 59 119 - -
Lele15g2188 293 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Lele15g2188 293 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Lele15g2188 293 SMART c3hfinal6 140 166 IPR000571 GO:0046872
Lele15g2188 293 MobiDBLite consensus disorder prediction 199 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g2188 Lele-ChrLele15 15837319 15838841 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele15g2188 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g2188 15 15837319 15838841 Lele15g2188 15 15837319 15838841 ECH
Lele13g0280 13 13729525 13744582 Lele15g2188 15 15837319 15838841 hybridization
Lele14g0248 14 13506797 13517353 Lele15g2188 15 15837319 15838841 hybridization